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ET12948

CSHL Arabidopsis genetrap mutant lines

Original: ET12948

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12948

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3706576 [Map]; Strand: c
      • AT3G11710.1 - [+] show detail - lysyl-tRNA synthetase 1
        Distance: -862; Region: promoter
      • AT3G11720.1 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: 0; Region: exon10 (CDS)
      • AT3G11720.2 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: 0; Region: exon9 (CDS)
      • AT3G11720.3 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: ET12948 - 3-prime edge 
    AAACGTAGAG TATTTTACCG ACCGTTACGA CCGTTTTATC CCTAATCTCA 
    GGACATCTCT TTTGCAAGGG ACAGATTCAT TCTCGCAGTC TCGAGTCTCA 
    TTCTCTTTTT CCATATCATC ATCAGCTTCC AACTTGGGTT CTTTCTCTTC 
    ACAATCTCTT CCTTGTCGGC TATGAAGCTC ATTTACTTGG CAGATTTCAT 
    CAGTTTTATC ACTAGAATAC AGAGCTTCAC GTATATGAGT ATACAATGGA 
    TCACCTAAAA CTGTCT

AT3G11710.1

Model type
Protein coding
Short Description
lysyl-tRNA synthetase 1
Computational Description
lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11720.1

Model type
Protein coding
Short Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Computational Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06440.3); Has 2540 Blast hits to 1555 proteins in 284 species: Archae - 0; Bacteria - 328; Metazoa - 676; Fungi - 254; Plants - 148; Viruses - 16; Other Eukaryotes - 1118 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11720.2

Model type
Protein coding
Short Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Computational Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06440.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11720.3

Model type
Protein coding
Short Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Computational Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06440.3); Has 1338 Blast hits to 1079 proteins in 231 species: Archae - 0; Bacteria - 187; Metazoa - 420; Fungi - 131; Plants - 130; Viruses - 9; Other Eukaryotes - 461 (source: NCBI BLink).
Link
InterPro Scan - TAIR