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ET12952

CSHL Arabidopsis genetrap mutant lines

Original: ET12952

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12952

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19639053 [Map]; Strand: w
      • AT2G47990.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: -375; Region: promoter
      • AT2G48000.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: ET12952 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC TGGATATACA TGATGAATAG 
    TTTCGTACTC TGTGGTTCTT TCAGTATACA AAACTTCTTC CTTACTTGAT 
    CATTCTCCAA TTTGCCTGAT ATAAATCAAT CCACATGCAT TATGTGTTAA 
    GCACAAGATT GATGAATCAC CTTTCCTTGT GGATGAATCG AGGAATTCGG 
    TTTTTCTTTT CAGAGAAATA AGGATTGAGA AACTAAAAAA ATCAGAAGAA 
    GAAAGGAAAG GAGAGAAGAG ATAAATTCGT TTAGTTTGTC CAAGTTAAAT 
    ACGAAGGTTA AGTAAGGGCT TCAGATGCCA ACAAATTGGT AGGCCCAATA 
    ACATAATAAA CGAGGCCCAA AAACTTCATT TGGATACTTA CTTATCAAAT 
    GTCTTCTTCG CCATTCTCTG CTTAAACCCT AAACCAGCCT CCTCTCCTCT 
    CTCTGATAGC TGCGTTCTTC TTCAAGCTAG CTCTCTGCTT GTACTCTAGA 
    ATAATGGAGG AAGAGCTTCG TGTTCGGCTG AATGACCATC AAGTGTCAAA 
    GGTTTTCCCT GTGAAGCCCA AATCAACGGC GAAACCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19641038 [Map]; Strand: w
      • AT2G48000.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -235; Region: promoter
      • AT2G48010.1 - [+] show detail - receptor-like kinase in in flowers 3
        Distance: -339; Region: promoter
    Flanking Genome Sequence: ET12952 - 5-prime edge 
    GTACACACTT ACACAGATTC TTTTCTTCGC ATGTTCCGGC GGCCATCACG 
    TGTAGATTAG TAATTGTGAG CAGCAGAGCT ATGATAAGAC TAAGACACGT 
    TTGGATTTAT TAGATAATGC AATTAGGCTT GTTATTAAAT ACGAAACAGA 
    AACATGAGTA GGTAAGACCT CTTCAGGATC CAATCAAGAA TTTTAAATAT 
    TATCATCTCT CACCAGATTA CCACTATTGA TTGAATAGTA TGAAAATGAA 
    ACAAAAAGTG AAAGGAAAGT TCTCGTGCAA CTTCGTGGAT GAGACTCAAT 
    TAGGTTCATG ACATGTTTTG ACCGTTTCAA GTAAATCAAG TAAATAACAC 
    AATCAATAAT ACACTTAAGA GTATATATAT ATTTAACTAA TGACCAAAAT 
    ATTACTAGTG GGTCAATGAG TGTAAGAAAC AAAGAGAGAG AGAGAGAGAG 
    AGTGTTATGT TATGTCTTTA TTGTCAATTA GTAATTCTCT TCGAATTAGA 
    TGTTGTTTCT CCGTCGAATC GCCGTCGTCT TCTTTGTCTT CACCTCTTTC 
    TCCGCCGCTC AGAACTCCAC GTGCCCT

AT2G47990.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Curator Summary
Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.
Computational Description
SLOW WALKER1 (SWA1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), U3 small nucleolar RNA-associated protein 15, C-terminal (InterPro:IPR018983), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 33528 Blast hits to 20320 proteins in 654 species: Archae - 34; Bacteria - 4945; Metazoa - 12077; Fungi - 7782; Plants - 4404; Viruses - 6; Other Eukaryotes - 4280 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48000.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G30780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48010.1

Model type
Protein coding
Short Description
receptor-like kinase in in flowers 3
Curator Summary
receptor-like serine/threonine kinase (RKF3)
Computational Description
receptor-like kinase in in flowers 3 (RKF3); FUNCTIONS IN: receptor signaling protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G11050.1); Has 112833 Blast hits to 111726 proteins in 4356 species: Archae - 97; Bacteria - 12546; Metazoa - 41926; Fungi - 9138; Plants - 32648; Viruses - 383; Other Eukaryotes - 16095 (source: NCBI BLink).
Link
InterPro Scan - TAIR