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ET12959

CSHL Arabidopsis genetrap mutant lines

Original: ET12959

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12959

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2803682 [Map]; Strand: c
      • AT3G09140.1 - [+] show detail - Protein of unknown function (DUF674)
        Distance: -887; Region: promoter
      • AT3G09140.2 - [+] show detail - Protein of unknown function (DUF674)
        Distance: -887; Region: promoter
      • AT3G09150.2 - [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin sy...
        Distance: 0; Region: exon1 (CDS)
      • AT3G09150.1 - [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin sy...
        Distance: 0; Region: exon1 (CDS)
      • AT3G09150.3 - [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin sy...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET12959 - 3-prime edge 
    CCGACCGTTA CCGACCGTTT TCATCCCTAG TTGTAATGGC TTTATCAATG 
    GAGTTTGGGT TTTCAATTGG GTCATGCTTC AAGGCACCAA ACCCACCTGT 
    TCTAATCTCT GCAAGCCCTA ATAAGATCAA TTTCACGTTG AGAAGGAGAA 
    ATAAAAGATT CTTACTTAGA GTCTCTGCTG CGTCGCATAA CGAATTCGCA 
    GAGTCTGCTT TAGAAGAAAC CAGGAAAAGG ATCGATCTTG AACCTTCACA 
    TCTCCAGGTA TATGCAATTA CATTTCGTTA GTGTAGTGGG AGGATTATAT 
    TTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2803611 [Map]; Strand: c
      • AT3G09140.1 - [+] show detail - Protein of unknown function (DUF674)
        Distance: -816; Region: promoter
      • AT3G09140.2 - [+] show detail - Protein of unknown function (DUF674)
        Distance: -816; Region: promoter
      • AT3G09150.2 - [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin sy...
        Distance: 0; Region: exon1 (5UTR)
      • AT3G09150.1 - [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin sy...
        Distance: 0; Region: exon1 (5UTR)
      • AT3G09150.3 - [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin sy...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET12959 - 5-prime edge 
    TCCTACTTTC TCCCTGATTA CAACAAGACT CACAAACTGA AAACCAAAGG 
    TCTCCTTCCT CGGACACTCT CTTCAATTCT TCTTCATACT GAAAACTGAA 
    AAAAGCAAGA TTCTTTATCT ATAAAAGAGA TAAAATTTTC ACAGTTTCAG 
    TGAGACAAAC GCAATTGGCA ACGACAATGA ATTTCAACAT CCGTCCGAGT 
    CATGGTCCAA CTATAGGGCC CACATCCGCC ACGTGGAATG CACAGTCACG 
    TTGACGTGGG GAATTCAAAA GTTTAGGGGT GTTTATTGGT TTGTAATTTA 
    AATAATTTTA TATGTGATTG AAAAATCTGG GGTTA

AT3G09140.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF674)
Computational Description
Protein of unknown function (DUF674); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G01150.1); Has 424 Blast hits to 257 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 422; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09140.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF674)
Computational Description
Protein of unknown function (DUF674); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G01150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09150.1

Model type
Protein coding
Short Description
phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Curator Summary
Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.
Computational Description
ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 403 Blast hits to 403 proteins in 61 species: Archae - 0; Bacteria - 184; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09150.2

Model type
Protein coding
Short Description
phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Curator Summary
Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.
Computational Description
ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 407 Blast hits to 407 proteins in 62 species: Archae - 0; Bacteria - 187; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09150.3

Model type
Protein coding
Short Description
phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Curator Summary
Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.
Computational Description
ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR