1. Home
  2. Mutant Lines
  3. ET12961

ET12961

CSHL Arabidopsis genetrap mutant lines

Original: ET12961

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12961

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6751081 [Map]; Strand: w
      • AT3G19470.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 67; Region: intergenic
      • AT3G19480.1 - [+] show detail - D-3-phosphoglycerate dehydrogenase
        Distance: -1450; Region: intergenic
    Flanking Genome Sequence: ET12961 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGC 
    TGCAGGGGAA GGAGCGTGTG CACCATTTGG AAACGAATTC AAATATATAT 
    GGCAAACAAA AACAAGTATG AGAAACAAGT TAATATGTTA TTGACTAACA 
    AATAATGATC TTGTTCAAAG AAGATGACAA AAGAGGAAGA AAAAAAGTAA 
    GCAAGGAATA GATGGTCGAC TAATTAAGTT GCACTAGACT TGGAACATAA 
    GAGCACACAA GTGGAAAACA CTTTCGGTCT GAATCTCCGA GATCAACTGC 
    TTTAAAGGAT CCATCCACTC CAAAGATGTA AGCTATGTTG CGCTTATTAT 
    CGTAGTCTTT ATCAAAAACC ACAGCGA

AT3G19470.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT3G22770.1); Has 1361 Blast hits to 1292 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1360; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G19480.1

Model type
Protein coding
Short Description
D-3-phosphoglycerate dehydrogenase
Computational Description
D-3-phosphoglycerate dehydrogenase; FUNCTIONS IN: in 7 functions; INVOLVED IN: oxidation reduction, L-serine biosynthetic process, metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: D-3-phosphoglycerate dehydrogenase (InterPro:IPR006236), D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), D-3-phosphogylcerate Dehydrogenase (InterPro:IPR015508), Amino acid-binding ACT (InterPro:IPR002912), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-3-phosphoglycerate dehydrogenase (TAIR:AT4G34200.1); Has 31099 Blast hits to 31093 proteins in 2807 species: Archae - 469; Bacteria - 19090; Metazoa - 735; Fungi - 1166; Plants - 566; Viruses - 5; Other Eukaryotes - 9068 (source: NCBI BLink).
Link
InterPro Scan - TAIR