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ET12963

CSHL Arabidopsis genetrap mutant lines

Original: ET12963

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12963

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET12963 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAATGTT 
    TTGGGCGTCA AAGTTTAAAC ACATCGATTT ATTCATCTCA CTCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2803778 [Map]; Strand: c
      • AT3G09140.1 - [+] show detail - Protein of unknown function (DUF674)
        Distance: -983; Region: promoter
      • AT3G09140.2 - [+] show detail - Protein of unknown function (DUF674)
        Distance: -983; Region: promoter
      • AT3G09150.2 - [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin sy...
        Distance: 0; Region: exon1 (CDS)
      • AT3G09150.1 - [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin sy...
        Distance: 0; Region: exon1 (CDS)
      • AT3G09150.3 - [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin sy...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET12963 - 3-prime edge 
    CTGGTCTAAT CTCTGCAAGC CCTAATAAGA TCAATTTCAC GTTGAGAAGG 
    AGAAATAAAA GATTCTTACT TAGAGTCTCT GCTGTGTCGG ATAAGGAATT 
    CGCAGAGTCT GCTTTAGAAG AAACCAGGAA AAGGATCGTT CTTGAACCTT 
    CACATCTCCA GGTATATGCA ATTACATTTC GTTAGTGTAG TGGGAGGATT 
    ATATTTATCA TTGTTTCTTG CTGTGAATTT TGGGTAAATT GATTTGAGTT 
    GTCATTAGGA ACCAAACAAA TAACTTTACT GCTATAGACT GCTTATATAA 
    GTAAAAGTTC GGATTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 11394112 [Map]; Strand: w
      • AT3G29578.1 - [+] show detail - transposable element gene
        Distance: -133; Region: promoter
    Flanking Genome Sequence: ET12963 - 5-prime edge 
    CCTACTTTCT CCCTGCAAAA CATGATATCG TTGCATAAGT TGTTCAAGTC 
    TTTTAACATC AAAACCAATA AGAAAGTTGT TTATGTCCAT TTGTGACCCG 
    TTTGGTATAT ATATGTTAAC AAGAATTTGG CAGTTCCTCT CGAAAATGAC 
    TAATTAGTAT GACAAGAAAT TTGATACTTT GTATGGTTAT TATCAATAGC 
    CATGTCTTCT GCTTTCAAAG GTGATGATAT GTATAGAAGT TTCGATATGC 
    AATATTTTGT TCCAACTTGA TGATCTTGTG AAATCCATCT AACAACTACA 
    TCTTTTATAC GTAAGGTGGC ATTATCTCAG CGATCAAACC AATCGTTCCC 
    CTTTTAATTC TCTTAGAAAG CAACAACCTA TGTTGAGGCT TAAAGCTTAT 
    GTATAACGTT ATACTTGCTT GGCTCATTCA CTTCACTTCA CTTCCTCGAT 
    CTTCAAAGTC AAGTGAAAGA AAGAATAAGA CACCTAAAAG ACATTACGTG 
    CTTCAAAAAA TTGTACCAAG TCACTCTCCA CTTAACAAAA ACTACTTCCA 
    AAAGGTGGAA ACTTACGATA TCTCTCTAGC TTCCTACCTA AGTTTGATAA 
    GGGCTCTAAG CCTTTTAACA AAAACATCAA TCTCATCAGA CAACATCATC 
    TAACCTTAAA GGAGCTCCCA CGTCCAACAC TTTTGC

AT3G09140.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF674)
Computational Description
Protein of unknown function (DUF674); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G01150.1); Has 424 Blast hits to 257 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 422; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09140.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF674)
Computational Description
Protein of unknown function (DUF674); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G01150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09150.1

Model type
Protein coding
Short Description
phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Curator Summary
Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.
Computational Description
ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 403 Blast hits to 403 proteins in 61 species: Archae - 0; Bacteria - 184; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09150.2

Model type
Protein coding
Short Description
phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Curator Summary
Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.
Computational Description
ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 407 Blast hits to 407 proteins in 62 species: Archae - 0; Bacteria - 187; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09150.3

Model type
Protein coding
Short Description
phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Curator Summary
Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.
Computational Description
ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G29578.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.1e-48 P-value blast match to GB:CAA37924 orf 2 (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR