1. Home
  2. Mutant Lines
  3. ET12964

ET12964

CSHL Arabidopsis genetrap mutant lines

Original: ET12964

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12964

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9467701 [Map]; Strand: c
      • AT2G22290.1 - [+] show detail - RAB GTPase homolog H1D
        Distance: 13; Region: intergenic
      • AT2G22300.2 - [+] show detail - signal responsive 1
        Distance: -3624; Region: intergenic
    Flanking Genome Sequence: ET12964 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTATTAA TGACCAGAAG 
    AAAGAAAAAG AGATGTATCT TTGTCATGAA CAAGAAGAAA CTTAGATCGT 
    CCGGTTATAG ATCTCAGAAT GGTTCCATCA ATATCATTGT CTGTCCAAAT 
    GCTATATAAA AAGAAATGTT GTGAAAGGTT AGTATTCAAC TATGAACACA 
    TGTTTTTGTG AATTCTGAGT TGTTACCAAC ACTCTCTACA TGTGATGTGA 
    CTTGTGAGTG TATCTTTATC TTAATAAGAG CAGAAAATCC TTTTAGTTTT 
    GG

AT2G22290.1

Model type
Protein coding
Short Description
RAB GTPase homolog H1D
Computational Description
RAB GTPase homolog H1D (RABH1d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: mitochondrion; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog H1E (TAIR:AT5G10260.1); Has 26960 Blast hits to 26930 proteins in 721 species: Archae - 17; Bacteria - 142; Metazoa - 14130; Fungi - 3768; Plants - 3162; Viruses - 20; Other Eukaryotes - 5721 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22300.2

Model type
Protein coding
Short Description
signal responsive 1
Curator Summary
Encodes a putative CAM binding transcription factor. Loss of function mutations show enhanced resistance to fungal and bacterial pathogens suggesting that CAMTA functions to suppress defense responses.
Computational Description
signal responsive 1 (SR1); FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: response to biotic stimulus; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), Ankyrin repeat (InterPro:IPR002110), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (TAIR:AT5G64220.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR