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ET13008

CSHL Arabidopsis genetrap mutant lines

Original: ET13008

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13008

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3066599 [Map]; Strand: c
      • AT5G09850.1 - [+] show detail - Transcription elongation factor (TFIIS) family protein
        Distance: -710; Region: promoter
      • AT5G09860.2 - [+] show detail - nuclear matrix protein-related
        Distance: 0; Region: exon1 (5UTR)
      • AT5G09860.1 - [+] show detail - nuclear matrix protein-related
        Distance: -33; Region: promoter
    Flanking Genome Sequence: ET13008 - 5-prime edge 
    CTTTCTCCCT GCTTGAGAAG AGTGGAGGAA GAACAATTTT AATTTAGGGT 
    GGATCCGGAT CCGGAAGATA TCCTCCCAAC AATCAAATTA TCCGCAAATA 
    TCCGGGCTTG GATCTGGATC CGAAATATTT TTAATTTATA AACTGAATAA 
    CAACATGTTC ATTGGGCCTT TCATAGTAAA ATGATATCCG TTGGGTGGTG 
    GGCTTCACAT TATTTAGTTT TACAGAAGAC CTTTGCCTGT ATATGTTGGA 
    TATGGCGTAG TTTTAATGTG TGGAATCAAA TCAATTAGAA ATTTAAAACA 
    TCTGTATTCA AAAATTGCTC GAAATTGTTC ATGGTATGTT ATTGCAGAAG 
    ATTTCATAAT AGCTCACATG AGAAGGATTT GAAGATTTCA AAAATTGCTC 
    GAAATTGTTC GAGATAAATA TTAGGTTCCA ATAATTGCAT AAAAGACATT 
    GTATTCATAA TCTACACTCA ACAAGTGATA AATAAACATT ACTTCCTAAC 
    AAAGTAAACT TTGATGGATC GAACACCTCC TTCAACACCT AAAAACTCGG 
    ATGTGATCTT CTCTTTGGGG GTTTTGATTG TACCGTCGAC GTAAATTCAC 
    TAAACGATTA GTGAGTGGCA GTGGCTCATG AGATGAAAGT CATGAAACAA 
    ACACTTTGAG ACCAAATGAA ATATTGATTT GACATATTGG GTCCACTTGC 
    TGCTA

AT5G09850.1

Model type
Protein coding
Short Description
Transcription elongation factor (TFIIS) family protein
Computational Description
Transcription elongation factor (TFIIS) family protein; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT5G05140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09860.1

Model type
Protein coding
Short Description
nuclear matrix protein-related
Curator Summary
Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.
Computational Description
THO1; CONTAINS InterPro DOMAIN/s: THO complex, subunit THOC1 (InterPro:IPR021861); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09860.2

Model type
Protein coding
Short Description
nuclear matrix protein-related
Curator Summary
Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.
Computational Description
THO1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: production of ta-siRNAs involved in RNA interference, gene silencing by RNA; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: THO complex, subunit THOC1 (InterPro:IPR021861).
Link
InterPro Scan - TAIR