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ET13025

CSHL Arabidopsis genetrap mutant lines

Original: ET13025

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13025

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5532018 [Map]; Strand: c
      • AT1G16150.1 - [+] show detail - wall associated kinase-like 4
        Distance: -397; Region: promoter
    Flanking Genome Sequence: ET13025 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACCT 
    GAGCTGACGA CAGCGAGCTT CGACGATTGT GGGCCAAATT ACTTTTTCCC 
    AAAGAAAGAA CCCAGAAATG TCCATATCAG CAATTACGCT AGCCACGTCA 
    TATATTTCGA CGCTTGGAAC ATATTCAACT CAGCTTATAT TACAAAACAC 
    TGCCAAATGG CCTTGCCTCA TTGGTCATCG CCCATTACAT TAATGGTTTT 
    GAAATCCGTT GACTTTCGAG CAAAGACTAT TTTGGTCAAA CATTGATTTG 
    CATTTCTTTC CAGTTTTCAC GCCTGATCCA TCTTATCTCA TCTTTGACAT 
    TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 11510202 [Map]; Strand: w
      • AT3G29647.1 - [+] show detail - transposable element gene
        Distance: 1159; Region: intergenic
      • AT3G29648.1 - [+] show detail - transposable element gene
        Distance: -4734; Region: intergenic
    Flanking Genome Sequence: ET13025 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACCGGAA TATTTCTTTA 
    CCTTCCAGTT CTTCATCATC TTCGAACAGC TTCTACCAGA TTAAGCCTTT 
    CTTTTACCCA TCGCCTTTTG CAATGAACAT TGGAAGTAAT TGACTTGATT 
    TACTTTGCTC ACCGGATTTC TTCTTTAGCC GATTAGAATC GAAGCAGTCT 
    TCAGAGAAAC TATCAAACAC GACAGGGACT CCAAATCTAC ATACTCCAAT 
    TCAATCAACT ACAACCACTT GAAATCAAAC GACCAAAGTG AACCATCGCT 
    TAATTTAATC CCATATGGGC AAGCGAGGAT TTACCAACAA TTGGACGAAG 
    AATCAAGTAC ACAGCTAACA AAGACCCATC AAACCACAAT GATTTAATAC 
    TTCAACGACA TAGAAGTGTT GATTTGAAGA ACAGGCAAAA GGCTTTACAA 
    AAAAACTACA AATCGAAACA AAGTATAGAA GAAAAACCGA CAAGAAGTTT 
    GAGATAGATC TGAAAAATAG CCAGATAGCT AAAACATAAA ACGAAATCTA 
    AAGAGATCCG ATGTTAATCG GATTAGCAAA AGATATGAAC AAGATTCAGA 
    GTTTTTTCTC TCTAAAAGAT TTGAGA

AT1G16150.1

Model type
Protein coding
Short Description
wall associated kinase-like 4
Curator Summary
Encodes a cell-wall associated kinase like protein of the receptor-like kinase (RLK) superfamily. Likely involved in Arabidopsis root mineral responses to Zn2+, Cu2+, K+, Na+ and Ni+.
Computational Description
wall associated kinase-like 4 (WAKL4); CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Wall-associated kinase (InterPro:IPR013695), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: wall associated kinase-like 2 (TAIR:AT1G16130.1); Has 121654 Blast hits to 119929 proteins in 4418 species: Archae - 143; Bacteria - 13875; Metazoa - 44623; Fungi - 10480; Plants - 34034; Viruses - 478; Other Eukaryotes - 18021 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G29647.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT3G29648.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Tnp2/En/Spm), has a 2.5e-169 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)
Link
InterPro Scan - TAIR