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ET13045

CSHL Arabidopsis genetrap mutant lines

Original: ET13045

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13045

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 332962 [Map]; Strand: c
      • AT3G02000.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET13045 - 3-prime edge 
    TCTGGTTTTG CATATTTAAC TTGCGGGACC GGTCTCTTGT TACACTTTTG 
    TTTGGAAAGA AACTAGATTA AACACGAATA AGAGAGAAAG AGGGATTGGC 
    TAAAGTTTGT TGGTGAGAAG AGAGTGAGAG CCATGCAGAG TATTTATAGA 
    GGCCTACTAC ACCTCTGAGT CTAACTCTGT TTTCCTCTAA TTATTAGTAT 
    TATTGTTCTT TCTTTATTAT TTGTGTATAA TAACATGACC TCTATTTACT 
    TCTCCATGAA AAAAGAAAAA AAGTAACAAA ACATATGAAT TAAAACCGAT 
    GACATCAAGA TAGTGATTGC TGTTGAAAAC AAACACCGAT AATAGTTATC 
    GGAATAATTT CATTTTTTTG TAAAAAAAAA AAAGGGGGGG GGGGGGGGAA 
    AAACCGGCTT TTCTAAAAAG GGGGTGGGGG GAAAAAAAGG GGCCCCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17495515 [Map]; Strand: c
      • AT4G37160.1 - [+] show detail - SKU5 similar 15
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: ET13045 - 5-prime edge 
    GATCATTTCA TTACGGGACC ATACCAATAA ACCGAACTCT AGTCCTAGCC 
    AATGCAGCCA CATTGATCTA CGGGAAGCTT CGGTACACAG TAAACCGAAT 
    ATCATACATC AACCCAACAA CACCATTGAA ACTCGCTGAT TGGTACAACA 
    TCTCGGGCGT GTTCGATTTC AAGACAATCA TTAGCACTCC AACAACCGGA 
    CCGGCTCATA TTGGTACATC GGTTATCGAC GTTGAACTTC ATGAGTTCGT 
    CGAAATCGTT TTCCAAAACG ACGAAAGATC AATTCAATCT TGGCACATGG 
    ACGGTACTAG CGCCTATGCT GTCGGGTAAG CAAACACATT GCCCTCTGTT 
    ATCTAAACCG GTTCCGGTTA TTCATAACTT AAACCGTACG TAATTGATTA 
    CCTTTTACAG ATACGGGTCA GGGACATGGA ACGTGACCAT GAGGAAACGT 
    TACAACTTG

AT3G02000.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Curator Summary
Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN).
Computational Description
ROXY1; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT5G14070.1); Has 1149 Blast hits to 1147 proteins in 188 species: Archae - 0; Bacteria - 38; Metazoa - 213; Fungi - 109; Plants - 748; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37160.1

Model type
Protein coding
Short Description
SKU5 similar 15
Computational Description
SKU5 similar 15 (sks15); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 16 (TAIR:AT2G23630.1); Has 5537 Blast hits to 5515 proteins in 1034 species: Archae - 14; Bacteria - 1701; Metazoa - 277; Fungi - 2124; Plants - 1252; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).
Link
InterPro Scan - TAIR