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ET13046

CSHL Arabidopsis genetrap mutant lines

Original: ET13046

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13046

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4873264 [Map]; Strand: c
      • AT1G14260.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G14260.2 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET13046 - 3-prime edge 
    GAGGTTTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAC TCGCGGAGGC 
    TGAGTATAGT ATGAGAACAG AGTCTCCGGC GGATAATGCA ATTGATATCT 
    ACGACGGAGA TACTACGGAG AATGAGGAGG AGGATCCACT GATTTCTTCC 
    GCGGAGTGTC GGATTTGTCA GGATGAATGT GATATTAAGA ATCTTGAGAG 
    TCCTTGTGCT TGCAATGGCA GCTTAAAGGT AGTTTTTTCC TTCATTGTTT 
    CATGATCACT ATAGGAACCT ATAGTTAGTT ATCAAGAGAA CATTTGAGTA 
    TTGACTTTTA AGTTTTACGT TGTGATCAGT ATGCTCACAG AAAATGTGTT 
    CAACGTTGGT GTAATGAAAA GGGAAACACT ATATGCGAAA TCTGTCATCA 
    GGTATATACA TTCTTTCTCT TGATACTAAT GATGTATGAT TTGTAGAGGA 
    TGCAGCTCAA ATTAACTTTC TCTTATTCCA GCCATACCAA GCTGGATATA 
    CCTCTCCACC ACCACCACCA CAATCTGAAG AAACTACTAT TGACATTGGG 
    TATGATCATT TTCATTATTC TGTTTCTGTC ATACACTTTA GGTTTGGTTT 
    CATGACTTGT AATTGTTCTG ACTTATTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17635585 [Map]; Strand: c
      • AT2G42330.2 - [+] show detail - GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting do...
        Distance: -1286; Region: intergenic
      • AT2G42340.1 - [+] show detail - unknown protein; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; B...
        Distance: 738; Region: intergenic
    Flanking Genome Sequence: ET13046 - 5-prime edge 
    ATGTAGTTAA CATGTTATGT GTTCTTTCAT ATCAAACATC TTCTGTTTTT 
    CTTCATCTTT TGTTTCTTTT AGCACAAGCC GAAGGATTTG ATCCCTCTGA 
    TGCTGAAACA ATTGAGGCGG TAGATGAGAG ATTGATTGAG CAAATGAATG 
    ATCATATCAC TGACTGGAAC GATGTAGAAG GCATGCTATC TGCGATGCAA 
    AGTAAATTGA ATTTGACAGG TTCTCACTAT GCGAAAATAA GAAGGAAGTA 
    TATAATAGTT GAAAACGCTA TAGAAGTTTC ACTACCGATT CTTGAGCAAT 
    CAAACCATGC CAAATTTGAC ATCTACAATA CATGCTTACG ACTATATTGA 
    TACATGATTA TTGTCAATCA ACTCGAGTGT TAATAAAACT ATATAAATAT 
    TAGGATTATC TTCGCAACAC TTGTGTGCGA GTTATGTGCG AACCATCATC 
    ACTCGAACTA CGCGAAGAAT TAGAACACAT ATTTCTAACT ATCGATGAGT 
    ATTAGAGCTA ATGAAAAATT TATGGATTAT TATTTAGAAT TTTAATATCA 
    TCAATGAGGT TGACATGTAG GTTTTT

AT1G14260.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G02960.3); Has 1793 Blast hits to 1789 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 745; Fungi - 130; Plants - 638; Viruses - 54; Other Eukaryotes - 226 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G14260.2

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G02960.3); Has 1793 Blast hits to 1789 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 745; Fungi - 130; Plants - 638; Viruses - 54; Other Eukaryotes - 226 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G42330.2

Model type
Protein coding
Short Description
GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain
Computational Description
GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain; FUNCTIONS IN: nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein N-terminal (InterPro:IPR022159), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT1G17070.1); Has 1086 Blast hits to 1065 proteins in 234 species: Archae - 0; Bacteria - 5; Metazoa - 675; Fungi - 134; Plants - 155; Viruses - 1; Other Eukaryotes - 116 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G42340.1

Model type
Protein coding
Computational Description
unknown protein; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 6; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR