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ET13055

CSHL Arabidopsis genetrap mutant lines

Original: ET13055

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13055

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26864975 [Map]; Strand: c
      • AT5G67340.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon2 (5UTR)
    Flanking Genome Sequence: ET13055 - 3-prime edge 
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    GATTCACGAA TTTATTTCAT TACATGATGG TAAGTTTCTA AATGTCTATG 
    CCCTCAAATA AACGAGGTTT GATTTTGTTT TTCTTACTAA TTTATAAACT 
    CATGTTGTTG TTTTGGTAAG TGAAGGTACA TATGGAGGTG TCTTGGTTAA 
    GAGTTCTTCT AGATAACATC TCCTCCTATC TAAGTTTATC ATCTATGGAC 
    GATTTATCTT CAAACCCTGC TCATAAGTAC TACACCAGAG GAGAAGATAT 
    AGGAAAGCTT ATCAAGCCTG TTCTTGAGAA CCTCATTGAC TCTGACGCGG 
    CTCCTAGCGA GTTGCTTAAC AATGGTTTTG AAGAATTAGA TCAATACGTT 
    GATGAACTAA GAGAACAGTT TCAGAGTTGG CAACCTCTTT CAACTAGAAT 
    CTTTTATGTG AGTTAAGCAA TAAACAAGAT TTTTAATCTC CCTTTATAAA 
    CTGTTTCTGA GCTAACTATT GAGTGTTTTC AGGTTCTTCG AATTGAATCA 
    TTAGCATCAA AGTTACGAGA ATCCAGTTTG GAAGTCTTTC

AT5G67340.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: endomembrane system, ubiquitin ligase complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT2G23140.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR