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ET13057

CSHL Arabidopsis genetrap mutant lines

Original: ET13057

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13057

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8000609 [Map]; Strand: c
      • AT2G18450.1 - [+] show detail - succinate dehydrogenase 1-2
        Distance: 0; Region: intron1 (CDS)
      • AT2G18460.1 - [+] show detail - like COV 3
        Distance: -711; Region: promoter
    Flanking Genome Sequence: ET13057 - 3-prime edge 
    ACGGTAGAGG TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGTTC 
    TAATCGAAAC AAAGCTAGAA ATTAGTCAAC CAATGAAATG ATGAGAAACC 
    CCAAAGACTA AACGAGATCG ATGATTCAAA CAATGTCTCG TACCGAAGGA 
    GGAGCTGAGA AGAATCTGGA GAGTTGAGAA GTGATGAAAG CGCCATTAGA 
    TTCCGATCTC CTCGACGACG ACGCAACTCG AAGGCACCGC CACATCTCTC 
    CGTCCACTAC TCACCACGAA CTTGTTAACC CAAAAATGGA AGAAGAGTCG 
    TTTTATATAA ATTGGCTTTA AGATTTTGAA AATGTAGCTG CAAAATTTCG 
    AAATTGCCAC TAGACCTGGT TTACGAGAAG TCTCTCAACG TGCCAATTTG 
    GTATAAAGAA TTTGAAAATG TTCATGAAAT TCCAAATTTG CCCCTACACC 
    GGGTAACGAA GTGTGTAAAA ATTTCAACGG TCAACGAAAC GCCACATCGG 
    ATGATTCGTA CGAGGCCCAT TTATAAGTAA ATGGGCTTTA CAAAGCCCAT 
    AATGTTGCAG CAGTGAAATA CTTCGGTATG CATTAGCAGC AGAAATGCAT 
    GACACTCTTA ACTTCAGGTA GGTTCGTTGC TCACTCACGT CACGCCGGAA 
    GAGACACATC GGAGATCGAC AAATCGATTC AGAGAGAGAG AGAGATAGCA 
    ATTTTCTTCT GTAGTGTTAC TTTCTGAGAG AGTCTGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 11510216 [Map]; Strand: w
      • AT3G29647.1 - [+] show detail - transposable element gene
        Distance: 1173; Region: intergenic
      • AT3G29648.1 - [+] show detail - transposable element gene
        Distance: -4720; Region: intergenic
    Flanking Genome Sequence: ET13057 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGTCCGTTTT CATCCCTACC 
    GGAATATTTC TTTACCTTCC AGTTCTTCAT CATCTTCGAG CAGATTCTAA 
    CAGATTAAGA CCTTTATTTT ACCCATCGCC TATTGCAATG AAAATTGGAC 
    GAAATTGACT TGATTTACTT TGCTCACCGG ATTTCTTCTT TAACCGAGTA 
    GGATCGAAGC GGACTTCAGA GACTCTATCA AACTCGACTG GGACTCCAAA 
    TCTACATAAT CCAAGTTCAA TCAACTACGA CCACTTGCAA GCACACGATC 
    AATGTGAACC ATCGCTTATT TTAATCCCAT ATGGGCTAGC TAGGATTTAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8000502 [Map]; Strand: c
      • AT2G18450.1 - [+] show detail - succinate dehydrogenase 1-2
        Distance: 0; Region: exon2 (CDS)
      • AT2G18460.1 - [+] show detail - like COV 3
        Distance: -818; Region: promoter
    Flanking Genome Sequence: ET13057 - 5-prime edge 
    CCTTGGTTTT GATTTGTTGT GTTCCTTGAA GAAAAAAGGA AGGGGATAAA 
    TCATCGTATA CGATCGTATA TCATACATAT GATGCGGTTG TTGTAGGAGC 
    TGGCGGTGCT GGCGCTAACA GCAGCAATAG GATTATCAGA GCATGGTTTT 
    AACACGGCTT GCATCACAAA ACTTTTTCCA ACTCGTTCCC ATACTGTTGC 
    AGCTCAGGTG CCAACATTTG CTTACTCTTG TTTTTAGCCT TATAATTAAG 
    CTTGGTTTTG TTTTTGATTG AGTTATGAAA TTTGGTTGTG AAGGGAG

AT2G18450.1

Model type
Protein coding
Short Description
succinate dehydrogenase 1-2
Curator Summary
Nuclear encoded mitochondrial flavoprotein subunit of succinate dehydrogenase complex .
Computational Description
succinate dehydrogenase 1-2 (SDH1-2); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase, flavoprotein subunit (InterPro:IPR011281), Fumarate reductase/succinate dehydrogenase, FAD-binding site (InterPro:IPR003952), Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal (InterPro:IPR015939), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953), Succinate dehydrogenase/fumarate reductase, flavoprotein subunit (InterPro:IPR014006), Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal (InterPro:IPR004112); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 1-1 (TAIR:AT5G66760.1); Has 17303 Blast hits to 17274 proteins in 2651 species: Archae - 275; Bacteria - 9814; Metazoa - 271; Fungi - 379; Plants - 135; Viruses - 0; Other Eukaryotes - 6429 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G18460.1

Model type
Protein coding
Short Description
like COV 3
Computational Description
like COV 3 (LCV3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF502 (InterPro:IPR007462); BEST Arabidopsis thaliana protein match is: like COV 1 (TAIR:AT2G20130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G29647.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT3G29648.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Tnp2/En/Spm), has a 2.5e-169 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)
Link
InterPro Scan - TAIR