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ET13058

CSHL Arabidopsis genetrap mutant lines

Original: ET13058

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13058

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10531346 [Map]; Strand: c
      • AT2G24735.1 - [+] show detail
        Distance: 0; Region: intron3 (NonCoding)
      • AT2G24740.1 - [+] show detail - SET domain group 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13058 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAACCAGA ACTAGTACCA 
    GCACTCGCAT CATTAGAGTT GTTGTCATAT GCTTTGGGCT TTTTTGGCTT 
    TCTCGACCCA TTTTTCGAAC CCTTTGGTCG GCCACGTCCT CGCTTTCCTG 
    GACCAGTACT AGGACCAGCA CTCGCATCAT AAGGTTGGTT GTTGAATTGA 
    TCAAATGGTC TTCTGTTTTG TAGTGGTGAG ACCATTACAT GAGGAGGTGC 
    TGATGTTGCG TGGGCATCTT CATTGACTTC ATGAGATGCT TCTCGGTCTA 
    TTGGACTAGT ACTAGGACCG GCATCTCGGT CATAAGAGTC CTCAATGTTG 
    AAGTTATCTA ATAGCCAAAG GGTTTGTGGC GGTGCATGAG GAGGTATTGA 
    TGTTGCGTGG GCTTCTTCAT TAACAGCATC TGATCTTTCT CTGTGGACTG 
    GACCAGTACT AGGACCAGCA TCTCGGTCAT AAGAGTCCTC AATGTTGAAG 
    TTATCTAATA GCCAAAGGGT TTGTGGCGGT GCATGAGGAA GTACTGATGT 
    TGCGTGGGCT TCTTCATTAA CAGCATCAGA TTTTTCTCGG TGAACTAAAC 
    CAGTACTAGG ACCAGCATCT CCATCATCAA ATAGCATTAA TAGGGTTGGA 
    AGTGTTGAGA CCATTACTGT AGTTAATATT GTCTA

AT2G24735.1

Model type
Other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT2G24740.1

Model type
Protein coding
Short Description
SET domain group 21
Curator Summary
Encodes a SU(VAR)3-9 homolog, a SET domain protein (Homology Subgroup V; Orthology Group 1). Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. This protein is a putative histone methyltransferase (predicted to methylate H3K9/20) related to the the Drosophila Su(var)3-9 and mammalian G9a proteins.
Computational Description
SET domain group 21 (SDG21); FUNCTIONS IN: histone methyltransferase activity; INVOLVED IN: regulation of gene expression, epigenetic; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), AT hook, DNA-binding motif (InterPro:IPR017956), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 7 (TAIR:AT1G17770.1); Has 4288 Blast hits to 4094 proteins in 395 species: Archae - 0; Bacteria - 274; Metazoa - 2162; Fungi - 458; Plants - 1048; Viruses - 4; Other Eukaryotes - 342 (source: NCBI BLink).
Link
InterPro Scan - TAIR