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ET13071

CSHL Arabidopsis genetrap mutant lines

Original: ET13071

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13071

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 15670702 [Map]; Strand: c
      • AT3G43820.1 - [+] show detail - pseudogene, copper amine oxidase protein family, similar to SP|Q43077 Amine o...
        Distance: -926; Region: promoter
      • AT3G43825.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13071 - 5-prime edge 
    AACCCACAAG AACACACTGT GACTGGCTTG AAGATTTGAT ATTCCTCCCA 
    AAGATTACAC AAACGACCAT ATCAAGAACT GATTGCCCAT CTTGTTTACA 
    CGCAGCAAGT TGACCAATCA GTTTATGAAT CTGAACCTTG TTTCCCACAG 
    AGAAACGTTG CTCTAAGTCC ATCCACAACT GGTGAGCGCC GGAGATGTAC 
    GTCATCGTAG ACTTTACTTT CGGTTCAATG GAAGTTCGAA TCCAACCAAC 
    AATCATTAAG TTGACTGTTT TCCAATTTTC AAAGTTTGGA TCAATAAATT 
    GTGGTTTTGG AATTGAACCA TTGATGAACC CTGTTTTACG CTTGGCTTGG 
    AGTGCGTTCA CCATATCTGT TGCACAAGAG TTGTAATTGT CACTAGATAA 
    GTAAACTGAC GAGATCATAG CTCCAGGATT GTCGGAGCTA GATAACATAT 
    AAGGTGAAAC TTTCACCGTT TCTGGCAGAC GAGCCATCTT CAACGAGAGA 
    CATGTTCATC TCACTCGA

AT3G43820.1

Model type
Pseudogene
Computational Description
pseudogene, copper amine oxidase protein family, similar to SP|Q43077 Amine oxidase (copper-containing) precursor (EC 1.4.3.6) {Pisum sativum}; contains Pfam profile PF01179: Copper amine oxidase, enzyme domain; blastp match of 57% identity and 2.6e-48 P-value to GP|5733089|gb|AAD49420.1|AF172681_1|AF172681 amine oxidase {Canavalia lineata}
Link
InterPro Scan - TAIR

AT3G43825.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 8.3e-106 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR