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ET13072

CSHL Arabidopsis genetrap mutant lines

Original: ET13072

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13072

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2503071 [Map]; Strand: c
      • AT3G07840.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET13072 - 5-prime edge 
    TTTCCTCCTA CTTTCTCCCT GATCCGGGGA AGGAAAGATG GGTCGTCTTC 
    CTAAGAATTA ATGGCTTTAA GTTAAACGGA GGTGGAATCT TCGACGGTGA 
    AGGCAATGCA GCTTGGAGAG TCAATAACTG TCACAAGACT TTCGAGTGCA 
    AGAAACTTCC CATCGTAAGT TTTTCTGTTC TTAATAGCCT TTAAGCAGAT 
    TTGTAAACCA AAATTAAACC ATTGAAGATT TTGAGTTATG TATTTGTATT 
    TGTTGTTGCA GAGTATAAGG TTTGATTTCG TGGAGAATGC TGAGATTAGA 
    GACATATCCT CCATAGATGC TAAGAACTTC CACATAAACC GTTCTCGGCC 
    CCAAGA

AT3G07840.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G07820.1); Has 3647 Blast hits to 3632 proteins in 442 species: Archae - 4; Bacteria - 810; Metazoa - 14; Fungi - 1262; Plants - 1450; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Link
InterPro Scan - TAIR