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ET13079

CSHL Arabidopsis genetrap mutant lines

Original: ET13079

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13079

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET13079 - 5-prime edge 
    CCTTATCCTC AGCATCATCC TCTCCGTCCC CACCCGTTTT CTTAGACCAC 
    GCCTGCGATG GCGCGTACAT T

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20557939 [Map]; Strand: w
      • AT5G50480.1 - [+] show detail - nuclear factor Y, subunit C6
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13079 - 5-prime edge 
    TCTACTTTCT CCATTATCCT CAGCATCATC CTCCCCGTCA CCAGCCGCTG 
    CTGGCCACGC CTGCGATGGC GCGTACATTC CACTACCAAC CATAGGAGTT 
    CCCATCACCA CTCCCGGTGG ATAATAATAC TGCGGTACTC CTCCACCGTC 
    AGGATGTGGC ATAGCCACAA AGCCAGGATC AGCGGTGGCG ATAGACTCGT 
    CCTTAGGGAC AACATCAAGA AGGAAATCGT AGGTGAAAGA GCTAGCCACT 
    GCGTTGGAGA TATCCGATTT CTGAAGCGTG TGGCGTTTGT TCTCCTCGGC 
    TTTGAGCCAC GACCGCATCG TGAGATCAAC GATGAACATT TCGCAAGCCT 
    TTGCGAAGAT GATCGGAGCC TCTGCGGAGA CCATGTGCAC ATCTGGATCA 
    GCCTTCATGA TCTTCTTAAT TCGAGCCAAT GGAAGCTGAC GGTTTTTGAA 
    ATCCGAGACG GTTTCCATCT GCTCAATCC

AT5G50480.1

Model type
Protein coding
Short Description
nuclear factor Y, subunit C6
Computational Description
"nuclear factor Y, subunit C6" (NF-YC6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C7 (TAIR:AT5G50470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR