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ET13083

CSHL Arabidopsis genetrap mutant lines

Original: ET13083

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13083

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26410710 [Map]; Strand: c
      • AT5G66030.1 - [+] show detail - Golgi-localized GRIP domain-containing protein
        Distance: -455; Region: promoter
      • AT5G66030.2 - [+] show detail - Golgi-localized GRIP domain-containing protein
        Distance: -822; Region: promoter
      • AT5G66040.1 - [+] show detail - sulfurtransferase protein 16
        Distance: 0; Region: intron1 (CDS)
      • AT5G66040.2 - [+] show detail - sulfurtransferase protein 16
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: ET13083 - 5-prime edge 
    TCCTACTTTC TCCCTGCACG GCATGTCCCT GGCTGAACTC TTCTGGAGTC 
    CTATATTCAT CATCCCCATT ACATCAAGAT CCTAATGATG CTATGTTGAT 
    GATTGAAATA GTCAAAAGAG AAAGGTGGGG CGTTACCTGA CGTCTAGATA 
    GCGGTGGCCG GCTAGAAGAA GGTCGTGGGC GACTGTTACC GACACCGATG 
    ATGGGACTCT GCTCTCGTCC GCCATTTTTT TCAATGGCTT ATTATTATAT 
    TTGACTGGAC AAAGACTTCA ATAATTTCAT TTTATATAAA TTAGTTGGGA 
    AAGTGATTAT AATTGGGCCA TATATTACAA ATACATAATG GGCCTAAGTT 
    GCTGCTTTAT GGGCTAAGCT GTTTTCGGAC TGTCCTTCAT ATTTTCATAT 
    TACCATTCCA AAACGGCATC ATTTTAGCTA ACCTCGTCTT GGGTTTACTT 
    GATGAATTTT CAAAAGGTTT AAGGTTTTAC ATGCAATACT AGAATAGTTG 
    AGGCTTCTGA ATGCAATTAT TCATTAGTAA AACACCCTTT ACACAATTCT 
    TACCATTCTT CGTCAGTCGA TCAGATCAAC GTTTTACCGT CTCACTGATC 
    GACGGGAAAG AGACGACGAC GTTTTTAACC TTTGGGTTGA GATCCGATCC 
    AATATTTCGA AATCGTGATT CCTTGTTTGT GACCTCTCTC TCTCTGCCTC 
    ACACTCTTCT CTAATCCTCA CTCA

AT5G66030.1

Model type
Protein coding
Short Description
Golgi-localized GRIP domain-containing protein
Curator Summary
Involved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in AtGRIP is crucial for Golgi localization.
Computational Description
ATGRIP; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053), GRIP (InterPro:IPR000237); Has 226787 Blast hits to 107130 proteins in 3750 species: Archae - 2735; Bacteria - 54789; Metazoa - 91225; Fungi - 18234; Plants - 12767; Viruses - 906; Other Eukaryotes - 46131 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66030.2

Model type
Protein coding
Short Description
Golgi-localized GRIP domain-containing protein
Curator Summary
Involved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in AtGRIP is crucial for Golgi localization.
Computational Description
ATGRIP; CONTAINS InterPro DOMAIN/s: GRIP (InterPro:IPR000237); Has 226693 Blast hits to 107013 proteins in 3750 species: Archae - 2739; Bacteria - 54726; Metazoa - 91166; Fungi - 18242; Plants - 12768; Viruses - 908; Other Eukaryotes - 46144 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66040.1

Model type
Protein coding
Short Description
sulfurtransferase protein 16
Curator Summary
Encodes a protein with thiosulfate sulfurtransferase/rhodanese activity in vitro, however, it is likely to use a substrate other than thiosulfate or 3-mercaptopyruvate in vivo.
Computational Description
sulfurtransferase protein 16 (STR16); CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT4G35770.1); Has 3621 Blast hits to 3614 proteins in 1089 species: Archae - 47; Bacteria - 2736; Metazoa - 68; Fungi - 45; Plants - 236; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66040.2

Model type
Protein coding
Short Description
sulfurtransferase protein 16
Curator Summary
Encodes a protein with thiosulfate sulfurtransferase/rhodanese activity in vitro, however, it is likely to use a substrate other than thiosulfate or 3-mercaptopyruvate in vivo.
Computational Description
sulfurtransferase protein 16 (STR16); CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT4G35770.1); Has 254 Blast hits to 254 proteins in 60 species: Archae - 0; Bacteria - 74; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR