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ET13090

CSHL Arabidopsis genetrap mutant lines

Original: ET13090

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13090

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 858556 [Map]; Strand: w
      • AT5G03440.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -151; Region: promoter
      • AT5G03440.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -128; Region: promoter
      • AT5G03445.1 - [+] show detail - pre-tRNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13090 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACT GACCGTTTTC ATCCCTACGC 
    TCTACCAATT GAGCTAAGGT CGGTTTTGTT AAGCTACTGA TAATAGTTTA 
    TTATATACGT TAATTACTTG TTGGAGAATC TAATCAAGTC CTGATTATAA 
    GAAGGATAAA GAAAAGGGAA TTAGAAAAGA AGACATTGAT TCCGATTGGA 
    TTCTGCTTTT TTCTTTTCAC GTTTCCGATT GTTTCTGGAA CTTTTTGTGA 
    GCCTAAGGTT TATCTCTCTC TTCTAGTCGT CGATTCTGGT CATCGAAGAT 
    TCCAATCAGC TAAGGTTACA T

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10781850 [Map]; Strand: c
      • AT4G19865.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13090 - 5-prime edge 
    TTATCCCTGC TTGGAGGTCC AGTCGACTCC GCCGTGCGGG TGCTTGATTG 
    TTGCAGTCAC ACTTGGCGCG ATGCACCGAG CATGAATGTA TCCCGAATGA 
    ATGCCTGGGC ATGTTCCCAC GATGGGAAAA TTTACGTAAT GGGAGGTTGC 
    CAAGGATTAA AGGACGAACC ATGGGCTGAG GTGTTCAATA CAAAGACTCA 
    GACTTGGGAA GGCCTCCCTG AGCCGGGTAG TGAGGTACGT AAGTGTTCCA 
    TTGACAGAAG CGGAGTGATT GAAGGAAAGA TTGAGTTTGG AAATGTAAAC 
    GAGATGTGTG CTTACGACAC GAAGCTATGT AAATGGGAGT ATTGTGTAAA 
    CAAAAGTGCA GCTTTGAGGT CAGAATGTAT GATTGAGAAT GTTTCATATG 
    GCTTCTGGAA CATGCGCTTG TTGTGGTATG ACAATGACAT ACAA

AT4G19865.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G19870.2); Has 1691 Blast hits to 1648 proteins in 128 species: Archae - 0; Bacteria - 62; Metazoa - 500; Fungi - 9; Plants - 1061; Viruses - 10; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G03440.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G03440.2

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G03445.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Tyr (anticodon: GTA)
Link
InterPro Scan - TAIR