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ET13091

CSHL Arabidopsis genetrap mutant lines

Original: ET13091

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13091

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19729372 [Map]; Strand: w
      • AT3G53230.1 - [+] show detail - ATPase, AAA-type, CDC48 protein
        Distance: 2700; Region: intergenic
      • AT3G53232.1 - [+] show detail - ROTUNDIFOLIA like 1
        Distance: 1606; Region: intergenic
    Flanking Genome Sequence: ET13091 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AAATATATAT AGTACATATG TTGAAAACCA AATGTAGGTA AAAAAAACTA 
    TGAGCCGACA ATGGGAATCG TCGAGGCGAA AAAGGTGTGC AGATGCACTC 
    GTGCGGTCCC TCCTCGTTAC TATTATTCAT CGTTTTCCCA CTACTGTTTG 
    ATTTATTACT ACAGAACTCA GAACATTATT TTCTCAATCT CTTTTCTTTT 
    TCTTTTTAAG TGTATTTATT TATTTATGAT GATGGGATAA TTGAGAAACG 
    TGACTTTCAA CTTTTTTCAG AAAGGAAACT TGATTTGTAT AAGTAGAAGT 
    CAGCATCATT GACGAAAGAG ATGGGGGAAA ACATGGTTGG TCTCATAATT 
    ATTGTCCCGA ACAGATTTTA AGGAATTCCT TAACTCTACT ATTTTATTGT 
    GTTGTATTCC ACTAACTGTG AATCGGTGGA GAGTTTTGTT GTTTTGCTTC 
    TTATTCCTTT GGACGTTACT ACGAAAATAG GGAGAAAAGA GGAAGATATA 
    TACGTCAGAT C

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19729426 [Map]; Strand: w
      • AT3G53230.1 - [+] show detail - ATPase, AAA-type, CDC48 protein
        Distance: 2754; Region: intergenic
      • AT3G53232.1 - [+] show detail - ROTUNDIFOLIA like 1
        Distance: 1552; Region: intergenic
    Flanking Genome Sequence: ET13091 - 5-prime edge 
    CTTTCTCCCT GTATATATTC ACGATCCAAA TATTCAAATC GGACATAGAT 
    ATTAAGATTC AGTATAACGC TCAAATCCTA CGAGTATTTG ACAAGTATCT 
    ATAAATTACT TTAATGATTA AATGTTTTGA AAATAATAAT CTAAATTTAA 
    TCAGCGGTTG CGGCGTGTCG GAAAAGTTCG AGACTTGGAG GAAGAGCATG 
    CACGTGATGT TGAACGTTTA AGTTTGTTTG TTTTCTTGGC TTCGGATTCG 
    TTTTAAGTAC TATATAGTTT TATAAGTGTA GTTGGGTCGT ATTTTTGAAG 
    ATATCATGAA TCTAATAAAT TAGTGGTAAC ACTGACTGCA TTGGTCAAAA 
    CATAGTTGTA CGTTACAAAA TTTTCTTTAC GTAACGTAAC TAAATATCCT 
    ATTACATATA TGCTTAACAT AATATATTGC ATTTGGACCC TTTAGACCAT 
    CGCAATTTCT ATAATCTACA TTTCAAAAGT GAACAATATC AAAAGAGTTA 
    ATAACTTATT CATTTTCGAC TTTATAAGTA T

AT3G53230.1

Model type
Protein coding
Short Description
ATPase, AAA-type, CDC48 protein
Computational Description
ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G53232.1

Model type
Protein coding
Short Description
ROTUNDIFOLIA like 1
Computational Description
ROTUNDIFOLIA like 1 (RTFL1); CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: DVL family protein (TAIR:AT2G36985.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR