1. Home
  2. Mutant Lines
  3. ET13100

ET13100

CSHL Arabidopsis genetrap mutant lines

Original: ET13100

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13100

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 103657 [Map]; Strand: c
      • AT4G00236.1 - [+] show detail - pseudogene, similar to leaf senescence-associated receptor-like protein kinas...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13100 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGCTGAGC TAAAGGAGAG 
    TGTAAGCAGA GCAAGAGCTC AACAAGTGAT ATGAAATTGG GACAGTAGTT 
    AGTAGTAACC ACAACATGTA AAAATTCAAT TGGTATGATA GCTAACAATC 
    TCCCACATTC TGTTGTGTGT TTCTTTGTTT TGTAATAACT CTGGTTACGA 
    GTAGAGAGAC ATTCATATAA GAAGCACATT TACAAAGTCT TAAAAGTTCA 
    TTATAACCAT AGACCAAAAG GCTAGTTAGA CAACTTAGCT AATTCATTAC 
    AACCATCGAC CAAAAGGCTT GTTAGACAAA GCTAATTCTC ACACGAGAAT 
    CCAAAGTCCT AAAAGTTCAT TAGAGTAGAT AGAAAGATGA AGCCTAAGAT 
    AGATAACAAA ATAAGGCATT ACATCTTCAT TAAACCCGAG ATTAAACGGA 
    TAAACATATA CAATCCAATA GCTTCCTCTT CTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26263382 [Map]; Strand: w
      • AT1G69780.1 - [+] show detail - Homeobox-leucine zipper protein family
        Distance: 2631; Region: intergenic
      • AT1G69790.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -3227; Region: intergenic
    Flanking Genome Sequence: ET13100 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCTCCC GCTTCTGAGC 
    ATAATTGATG GATTTGACCT CTGAATTGTG TCCACACACC ATTCATTCAT 
    TATAAAGTAC TCTAGATTTA CTACTTCAAT AGAAACTTTG AAATATGAAG 
    ATTAAAAGAG ATATTTGAAA CTGATATATT TGTATGGCTA GCTAGTTCCC 
    ACTTCAAACA TCTACATGGT ATGGATATGG AATGTGTGTT AAAGTTCATG 
    GTCTTACGAT CGTTTAAACA ACTTCTTATA AAAAAAATTA ATAAGGATAT 
    ATTTATAATT TTCTATATGT GATGTTTAAG TATTCTCTNC ACGTCGACGA 
    CCAAGGTAGG GGTAAGATAT AAATTATTAA ATTTAAAGAA CTTATAGCAT 
    AACTTGTAAA TTTTGGTGTA TTGACCCACT ATAACCATGT TCGATACTCA 
    CATTTCAGTT AATAACTATT TTTTAATTAA TACTCTCTCT ATTTCAAAAT 
    GTAAGAGACA TTTTTATTTT

AT1G69780.1

Model type
Protein coding
Short Description
Homeobox-leucine zipper protein family
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description
ATHB13; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cotyledon morphogenesis, regulation of transcription, DNA-dependent, response to sucrose stimulus, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 23 (TAIR:AT1G26960.1); Has 11763 Blast hits to 11710 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9272; Fungi - 193; Plants - 2061; Viruses - 5; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69790.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G26970.1); Has 120936 Blast hits to 119356 proteins in 4013 species: Archae - 119; Bacteria - 14073; Metazoa - 44105; Fungi - 10534; Plants - 33874; Viruses - 414; Other Eukaryotes - 17817 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00236.1

Model type
Pseudogene
Computational Description
pseudogene, similar to leaf senescence-associated receptor-like protein kinase, blastp match of 56% identity and 4.7e-52 P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf senescence-associated receptor-like protein kinase {Phaseolus vulgaris}
Link
InterPro Scan - TAIR