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ET13103

CSHL Arabidopsis genetrap mutant lines

Original: ET13103

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13103

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26898044 [Map]; Strand: c
      • AT1G71370.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: ET13103 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    ATGGCTAGTG AACGTATCTG CATTTTACAT TGTAGCAATT ATTATTAAAC 
    CACCCTGTGG CCGAGAGCGA GAGAGAGAGA GAGAGAGAAA AGAGATACGT 
    AAACGATGCC TGGAATGTCA AGTCCACGTG CAGCGACATC TGTGCATAGA 
    AGGACACCGC TTGATGCCTC TGTAAACGAA GCTAATGCAT TGTCTCTAGC 
    ATTCTGATCC ATCTTCCCAT GGGTGGAAAA GAAGGAAATG GACTTGAGGG 
    TAGGAATTTT TGAAAGTACG AGTCCCCAGT AATCAACACA AGCACATGTC 
    ATGAAGAATC TGCAGAAGAG ATACTAGTTA GACTGCCTGT AAAAGGATGC 
    TTAATTTGAT AAGTCCGTTG TGACAAAACT TACACGACAA GCTTTTTATT 
    TTTGTTCTCG ATCAGGAGAT GCACTAGTTG AGATGACTTT TGATCTGCTT 
    CGCATTTTAA ATACTGCAGA GGCACGAAGA AGATATAAAC TTACTATCCC 
    GAAACACATA TACGTATTTA AATATTGACC TTAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26556151 [Map]; Strand: w
      • AT1G70460.1 - [+] show detail - root hair specific 10
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET13103 - 5-prime edge 
    CCTACTTTCT CCCTGGTTTT AGGGATTTGA GTGTTGTTTC TGTTATACAT 
    GAAACAATAT TCAAACAAGG CAAAAAAATG TCGGACTCGC CAACTTCTTC 
    TCCACCAGCA CCATCCGCTG ATTCCGCTCC GCCGCCGGAT ACCTCATCCG 
    ACGGATCTGC TGCTCCTCCA CCGACGGATT CAGCACCACC TCCGAGTCCA 
    CCGGCTGATT CATCTCCGCC TCCAGATCAT CCATC

AT1G70460.1

Model type
Protein coding
Short Description
root hair specific 10
Computational Description
root hair specific 10 (RHS10); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: membrane; EXPRESSED IN: root hair, root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G70450.1); Has 376121 Blast hits to 219094 proteins in 6322 species: Archae - 675; Bacteria - 71771; Metazoa - 140962; Fungi - 47170; Plants - 60341; Viruses - 7360; Other Eukaryotes - 47842 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G71370.1

Model type
Protein coding
Short Description
DEA(D/H)-box RNA helicase family protein
Computational Description
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G05450.1); Has 38883 Blast hits to 37973 proteins in 2981 species: Archae - 667; Bacteria - 18879; Metazoa - 5670; Fungi - 4523; Plants - 2427; Viruses - 8; Other Eukaryotes - 6709 (source: NCBI BLink).
Link
InterPro Scan - TAIR