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ET13110

CSHL Arabidopsis genetrap mutant lines

Original: ET13110

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13110

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 858542 [Map]; Strand: w
      • AT5G03440.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -137; Region: promoter
      • AT5G03440.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -114; Region: promoter
      • AT5G03445.1 - [+] show detail - pre-tRNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13110 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACGCTCTA CCAACCGAGC 
    TAAAGTCGGT TTTGTTAAGC TACCGATAAT AGCTTATTAT ATACGCTAAT 
    AACCTGCTGG AGAATCCAAT CAAGTCCCGA TTATAAGAAG GATAAAGAAA 
    AGGGAATTAG AAAAGAAGAC ATTGATTCCG ATTGGATTCT GCTTTTTTCT 
    TTTCACGTTT CCGATTGTTT CTGGAACTTT TTGTGAGCCT AAGGTTTATC 
    TCTCTCTTCT AGTCGTCGAT TCTGGTCATC GAAGATTCCA ATCAGCTAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1230944 [Map]; Strand: c
      • AT3G04570.1 - [+] show detail - AT-hook motif nuclear-localized protein 19
        Distance: -42; Region: promoter
    Flanking Genome Sequence: ET13110 - 5-prime edge 
    CTACTTTATC CCTGCAAAGA ATGATACTAA GCAAGAAAGA GAAAAGATGT 
    AATGGAAGCT AACTTATAAA AATAAGTGGA AGCATATGTA TATGTGATAC 
    ACATACATGT ATACGTATAG TGTTTATAAG AAATAAAAAT TAAAAACAAA 
    TCCCTCAACT CAAGGCTTGA GAGAGTGACA TAATTATATT TAAGACAGAA 
    AAAAAGTCGT ATTACAAATA GGATACAATA TGCATCGTAC GTTTTCTTGG 
    GAAAATTTTG ATGACATATT GTTTTGCAGT TTTATTGTCA TTTGACAGAA 
    AAATTTGTTA AAAATTGGCT TTAAATATTA ATTGGTTAAG ATAATTTTTT 
    AAAAACCTGT CATTTTGTAT TTTGTCTTTT TTAAGTTAGC GTTATAATTG 
    ATGTGTAGGG TCGAGCGCCG AGGTTGAACT AATGGGGCGC ACGATCGTTT 
    TCCCATTTCA ATATTTATAT CGAAAGTTGA ATCATAAGGT ATTTTGGAAT 
    ATAAAAAACA ATATAAAATA ATATCTACGA AGTGTTTCAT TGGATCCAAA 
    TATAAATATT TTTCACGAAT CTATAACAGC TAAAATATTA AACAATTACA 
    CATACAAAAG AATTATAATT TGCTAATTAT TGAAATGTTT GAATACTTGA 
    AGGAAATTAA AATTCACTTA AAAATGAAAG TCAAATAAGC CTAAGAATAA 
    TACAATTGCT ATAAATAAAA TACTAGTATT TACATACACG CATGCATCG

AT3G04570.1

Model type
Protein coding
Short Description
AT-hook motif nuclear-localized protein 19
Computational Description
AT-hook motif nuclear-localized protein 19 (AHL19); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 20 (TAIR:AT4G14465.1); Has 7030 Blast hits to 3903 proteins in 396 species: Archae - 17; Bacteria - 3505; Metazoa - 1173; Fungi - 108; Plants - 1514; Viruses - 84; Other Eukaryotes - 629 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G03440.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G03440.2

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G03445.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Tyr (anticodon: GTA)
Link
InterPro Scan - TAIR