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ET13111

CSHL Arabidopsis genetrap mutant lines

Original: ET13111

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13111

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18118801 [Map]; Strand: w
      • AT2G43700.1 - [+] show detail - Concanavalin A-like lectin protein kinase family protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: ET13111 - 3-prime edge 
    GACCGTTACC GACCGTTTTC ATCCCTAACA ACAAGTACTA CAACATAAAA 
    GTAAACACAA ACGCATACTT TTCAGGTCAT GTGTAATTAT TCCACCGCCG 
    ATATAAGTAT AAACAGAAAT CAAAACGATA CATTCAATAC AATCACCAAA 
    ATAAAGATAT TTATCAAGCA AACACCGTCA CATTTTAGAT TTCTCACCAA 
    ACCTCGACCA TCACTTTTTA CCGTCCGACG GAAGTCATCG CTTCCGTGAT 
    GGTCAAGTGT CCTTCCTGAC TCCTTTGTCA TCAATCGAAA ACATAAAATA 
    TTTACAAACA AACATGTCAT ATATCATTTC ACGACCGAAC TCAGCATCAC 
    GTCTCAGCGT CCCCGGGAGG TAAAAGGTTC CGTTAACGTC AAGGTACCAA 
    TGGACCCTTG TGATGTCAAA ACACCAAGTA CACTCTCAGA TGTCTCAGAC 
    CACATTCTGA CCTTCTCTGC TTTGACTATA TCGAGTAGAT TATCTGGAAG 
    CTGCAGATCA CCACCCAAGA TCTGGACCAC CTTAGACATG TCTGGCCTAA 
    TTGCTACAGC CTGGTGCGAA CACAACACTC CCAATTTCAA AACAAGCTCG 
    AGCTGTTCTC TATTGTCTTC GTGACGGATT CCATCATTGA CTGCCTCGAG 
    AATATCTCCG TTTTCCAGCA CTTTAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18118879 [Map]; Strand: w
      • AT2G43700.1 - [+] show detail - Concanavalin A-like lectin protein kinase family protein
        Distance: 35; Region: intergenic
      • AT2G43710.1 - [+] show detail - Plant stearoyl-acyl-carrier-protein desaturase family protein
        Distance: -1077; Region: intergenic
    Flanking Genome Sequence: ET13111 - 5-prime edge 
    CTTTATCCCT GCTTGTTGTG TTTTTCAGCT ATGAAAAGCT ACATATTTCT 
    TCTGTGTGCT AACTTATTGG ATAAATTGGA TATTTTTAAG AGATCTAATG 
    TTTACACAAA CGTATGGTGA ACACCAATGG GGATGTTTAC ACACACTTAT 
    GATTTATTAC TGAAAGAGAT GTTAATCGAA GTATATACTC CATTGATTAA 
    TGTTAATCAC CGAAAGAGAT GTTAAACAAG CATTAATGTT TACACTTAAT 
    GCGATGGAAC GAAAACAAAG AATAAGTTTA AATTTGTTGT CATGGTCTCA 
    ATGAAAAACC GAAAACGTTG TGCTATCAAA TTACTCAAAA CGTTGAGCTA 
    GCTAAACTTG GCAGAAAAGT ATCGAATGAT GCTAAAATGC AAAAAACCAT 
    TAAACCCAAT GTACGGTTTA TAGAGTTTTC ATATGCCAAG TGGGACATCC 
    ACGTGGAGAT CCTATGCCAC TTGTCCCCTC TCTGTCTCTT TCATGCTTCA 
    AACTTATTTG GCTTTTACGT GGATTCTCAC GCCCGAGTAC GTCGATTATT 
    ACAAAACTCA CATAAATTAA TATAAACACT TTATATTTTG TTTTGACCTT 
    TTTACCCCTT CTCATTGCTC ATCAATTTTC ATAGATCTAA TACCAAATTA 
    T

AT2G43700.1

Model type
Protein coding
Short Description
Concanavalin A-like lectin protein kinase family protein
Computational Description
Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT2G43690.1); Has 122686 Blast hits to 121162 proteins in 4906 species: Archae - 111; Bacteria - 13587; Metazoa - 45416; Fungi - 10588; Plants - 34514; Viruses - 415; Other Eukaryotes - 18055 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G43710.1

Model type
Protein coding
Short Description
Plant stearoyl-acyl-carrier-protein desaturase family protein
Curator Summary
Encodes a stearoyl-ACP desaturase, involved in fatty acid desaturation. The ssi2 mutants have increased 18:0 and reduced 18:1 fatty acids. Exogenous application of glycerol to wild type plants mimics the ssi2 mutant phenotype. The altered 18:1 fatty acid content in the ssi2 mutants has an impact on SA- and JA-mediated defense signaling. ssi2 mutants resulted in hyper-resistance to green peach aphid and antibiosis activity in petiole exudates.
Computational Description
SSI2; FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity, stearoyl-CoA 9-desaturase activity; INVOLVED IN: in 10 processes; LOCATED IN: chloroplast, chloroplast stroma, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Fatty acid desaturase, type 2 (InterPro:IPR005067), Stearoyl-ACP desaturase, conserved site (InterPro:IPR005803); BEST Arabidopsis thaliana protein match is: Plant stearoyl-acyl-carrier-protein desaturase family protein (TAIR:AT3G02630.1); Has 948 Blast hits to 940 proteins in 221 species: Archae - 0; Bacteria - 436; Metazoa - 2; Fungi - 0; Plants - 452; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Link
InterPro Scan - TAIR