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ET13115

CSHL Arabidopsis genetrap mutant lines

Original: ET13115

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13115

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19601203 [Map]; Strand: w
      • AT2G47860.2 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G47860.3 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G47860.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET13115 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACCACCG CGTCCTCCTC 
    GTCGTCATCA TCATCTCTGT AGTCGCACTC GTCAAGGTTC AAGAACATTG 
    AGAAAATCCT CTGCACCGAG TCGGTGTCGT ACATGGCGCC GATGTTCGCC 
    GGAATAAGGA TGTCTTCAAG GATGGCCTGG TCGAGCAGGT GGCTGATCCG 
    TCTCTCCAGA TCGGATCTGC AAGAGACGGA GGTGCCAGAT CCTATAGCGG 
    TCTTCAACAA GCTAGAGAGG AAGGAGATCG GAATCGAGCT TTTGTTCGCT 
    TGCGTTGGGA GGAGCCCGAC GACCGCTTCA AGGACGATTC GCTGTTTCCT 
    CTGAAGATCG GAATCTGATT TGACGAGATT CGGTTCTCTG ATGATCTGCA 
    GTGATTTGCG AGCGTAGCTC ATAAGGATGT CACTGATAAT GTCGTGATTG 
    AGACCTTTGG ATTTCATGGC GGAGAGAACT CTCTGGAAGA AATCAAGCTT 
    AAGGATGGGA AGAGAGCGAC CCCACCAGTC ACAAGGTTTC GCAGTCTCCG 
    GGACGCCGCA GCTGAAACTC TGATCAAGCT TGAGCAAAAC CAGAGGCTAG 
    CTGTTCTTTG CAGGCGTTTA CAGCGATTGC GT

AT2G47860.1

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1); Has 884 Blast hits to 856 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 876; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47860.2

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47860.3

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1).
Link
InterPro Scan - TAIR