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ET13119

CSHL Arabidopsis genetrap mutant lines

Original: ET13119

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13119

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20500448 [Map]; Strand: w
      • AT3G55280.1 - [+] show detail - ribosomal protein L23AB
        Distance: 0; Region: intron1 (5UTR)
      • AT3G55280.3 - [+] show detail - ribosomal protein L23AB
        Distance: 0; Region: intron1 (5UTR)
      • AT3G55280.2 - [+] show detail - ribosomal protein L23AB
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: ET13119 - 5-prime edge 
    TTCCATCCTA CTTTCTCCCT GCTCTAGGGT TTCTGTTTCG CCGCTCAGGT 
    TCGTCAATCT CTCGATATCC TTTCTCTACC TTCTCCTCAG CTTTCTGAGT 
    ATTGAATGTT GTTGTTAACT GTCTCTGAAT ACGATTGATT TTGTGTCATT 
    TTTCTCGTGC TTCGTATTTG TTGATTGATT GATTTACATG TCATGATTTG 
    AAATCTTTGT ATTGCTAATT GCTATTGCTC TGTTTACTGA TTTTCTTTTC 
    TGGGGTTATC AGGTTTCGTG AAAAGAATCT ATCTTGAGCA ATGTCTCCAG 
    CTAAAGGTAC GCCTTTTTTT CTTTCATTGT TATCTGATTT GATTCTACAT 
    CGTCTTCTAT TTCTCTTTTG CGTGTAATTA CTTTGTTTAT CATTATTCAA 
    TACTGTGACT GAACTTACTA CTGTATACAG CTTTCTGAAA TGTATGATTC 
    ATCTCACTCG AC

AT3G55280.1

Model type
Protein coding
Short Description
ribosomal protein L23AB
Curator Summary
60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA
Computational Description
ribosomal protein L23AB (RPL23AB); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, intracellular, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23/L25, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025), Ribosomal protein L23 (InterPro:IPR019985); BEST Arabidopsis thaliana protein match is: ribosomal protein L23AA (TAIR:AT2G39460.2); Has 2614 Blast hits to 2614 proteins in 920 species: Archae - 307; Bacteria - 1151; Metazoa - 410; Fungi - 142; Plants - 120; Viruses - 0; Other Eukaryotes - 484 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55280.2

Model type
Protein coding
Short Description
ribosomal protein L23AB
Curator Summary
60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA.
Computational Description
ribosomal protein L23AB (RPL23AB); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, intracellular, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23/L25, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025), Ribosomal protein L23 (InterPro:IPR019985); BEST Arabidopsis thaliana protein match is: ribosomal protein L23AA (TAIR:AT2G39460.2); Has 2614 Blast hits to 2614 proteins in 920 species: Archae - 307; Bacteria - 1151; Metazoa - 410; Fungi - 142; Plants - 120; Viruses - 0; Other Eukaryotes - 484 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55280.3

Model type
Protein coding
Short Description
ribosomal protein L23AB
Curator Summary
60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA.
Computational Description
ribosomal protein L23AB (RPL23AB); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, intracellular, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23/L25, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025), Ribosomal protein L23 (InterPro:IPR019985); BEST Arabidopsis thaliana protein match is: ribosomal protein L23AA (TAIR:AT2G39460.2); Has 2615 Blast hits to 2615 proteins in 920 species: Archae - 307; Bacteria - 1160; Metazoa - 408; Fungi - 134; Plants - 120; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).
Link
InterPro Scan - TAIR