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ET13120

CSHL Arabidopsis genetrap mutant lines

Original: ET13120

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13120

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8042248 [Map]; Strand: c
      • AT2G18530.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 1468; Region: intergenic
      • AT2G18540.1 - [+] show detail - RmlC-like cupins superfamily protein
        Distance: 134; Region: intergenic
    Flanking Genome Sequence: ET13120 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAATGTCAC 
    AATCTCATAT TTGACCATAT GTCAAAAACA TCAAACTTTA CATAGCTAGA 
    TGCTCAATTT ACAAAAGCTA AAGAACAAAA CGAACACTCA CGAAAATATT 
    AAAACGAGAA AGTTATGTGC TTTTAAGACT CGACCGCTAT ATTTCCTCGG 
    GTGGTTTTGG CTGCGGCGGC CATCTCCGCT TCTCTTCTTC TTCCTCTTTT 
    TTCCTTCGTT CCTCCTCTGC TCTTTTAGCC GCTTCTTCTT CTCTCTTTCT 
    CTCCTCTTCT CTCCTCATAG CTTCCTCTTC ACGTCTCTTC CTCTCCACAT 
    CTTCTCTCTC TTTCCTCTGC CTCTCTTCCT CCAGTATCTT CGCCATCTCT 
    T

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11082515 [Map]; Strand: c
      • AT4G20630.1 - [+] show detail - Protein with domains of unknown function (DUF26 and DUF1204)
        Distance: -289; Region: promoter
    Flanking Genome Sequence: ET13120 - 5-prime edge 
    CCTACTTTCT CCCTGGACAG GAGAGAGGAG TTGAGCGTTT AGACTAGTAT 
    TTTGCGGCGA AGGGACAGGA GGCGATGAAA AAGTCAAAGT TCGAAGGTTT 
    GTCTGATTTA AATCACACAA TAAGTTCTGT CTCGACCTGA AATGAAGGCA 
    GTGTGTGAGT TTATTACTAG TTTATGTAAT TATGCAACGA CACCGTACAG 
    TTTCATCTCA TATCATGTTA TATATTACTC TCTCTGTAAG TTTGATGTTT 
    TAAGTTTCGC ACATAAATTA AGAAAAAGTA ACTTTTCTAT TTAATTTTAA 
    TTACTATTTT AATAGTTTAA TAATATTACT ATTACCTCGC TCCTTTCACT 
    ATTGGCAACA AACAAGATTA ATAATCATAT TTAATTTTTA CAAAACATCA 
    ATCTTATGGA ACAAATAAAA AAATCCAAAC CATCAAATAA CTTGGAACAG 
    AGGGAGTATT TTTATGTCTA GTAGTAACGT TATGTTTGTA TGTTGCTGGA 
    AAATTTAGAA AAAAATAAAT GCTGAAAACA CTGTATTTGA TGATTGTTAC 
    ATAGTTTCTG TTTTCATTTT TTGGTCACAT AATATAAAAT TCGTTGATTA 
    TTCAGTTTTT AGAATATTTT TTGTTTTGCC ATATTGGGAT CTCTTTAGGC 
    ATCTGAGCTC CGCTTCTTCC CTTTGGCTTA CCTCCTGGAT ATCAGTCTCT 
    AGCATCCGCG ATCTCGTCTC GAACTTCAGT TTGACCACGA TTCTTT

AT2G18530.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G46160.1); Has 38308 Blast hits to 38230 proteins in 1736 species: Archae - 29; Bacteria - 3544; Metazoa - 15847; Fungi - 4907; Plants - 6607; Viruses - 50; Other Eukaryotes - 7324 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G18540.1

Model type
Protein coding
Short Description
RmlC-like cupins superfamily protein
Computational Description
RmlC-like cupins superfamily protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT4G36700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20630.1

Model type
Protein coding
Short Description
Protein with domains of unknown function (DUF26 and DUF1204)
Computational Description
Protein with domains of unknown function (DUF26 and DUF1204); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF26 and DUF1204) (TAIR:AT4G20530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR