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ET13121

CSHL Arabidopsis genetrap mutant lines

Original: ET13121

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13121

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 2735614 [Map]; Strand: c
      • AT2G06822.1 - [+] show detail
        Distance: -6539; Region: intergenic
      • AT2G06830.1 - [+] show detail - transposable element gene
        Distance: 4257; Region: intergenic
    Flanking Genome Sequence: ET13121 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACTC 
    TTCGATACAT TGCTATTTAT GTATCCAAGA CAGCTAATTA CTTGAAACAA 
    AAACCTTCAA AGTTCCTATT CTTTTATCCT AACTAAAAAC CCCTCTTTGA 
    TAAATTAAAT AACGAACCAA CGTATTGTCT CCATGTACAT GTTATAAGCA 
    GGAACAGCCA AATTAACATG ATTTTATTGA GTGGCACCCA TGTGTCGGTT 
    TTTAATGGTC GGTCCATTAT TTCATTTAGT TTATATTCTA AGCTTCCTGA 
    CATTAAAGCT GAAGTTTAAG TATTTTATCT ACTTACTTAA AAGTAGATCA 
    AGTAGTCGTG TGAAGTCAAG ACAGTCTTGA AATGGTAGGA TTGGCACTTA 
    GCAGTGAGCA AAGTGTTTGA CTTTTTTAAA ATAACCTTTA ATCAAACCAA 
    AAATGGTTGA CTTTTTCTAA AACCTAGTTT TTTTTATTTA GGGGTTTCAT 
    ATTTATTTGT GATTCAGTTA CTAACACGCA TCACCACTTT GGAATCTCGA 
    TACACATTCA TGTGTATAAG AATCTATAAA AAAAAATAAA CTATATATGA 
    TTACTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25715548 [Map]; Strand: w
      • AT1G68530.1 - [+] show detail - 3-ketoacyl-CoA synthase 6
        Distance: -741; Region: promoter
      • AT1G68530.2 - [+] show detail - 3-ketoacyl-CoA synthase 6
        Distance: -741; Region: promoter
    Flanking Genome Sequence: ET13121 - 3-prime edge 
    AATGAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TACTTTTAAG GTATATGTGC TATATGAATC GTTTCGCATG GGTACTAAAA 
    TTATTTGTCC TTACTTTATA TAAACAAATT CCAACAAAAT CAAGTTTTTG 
    CTAAAACTAG TTTATTTGCG GGTTATTTAA TTACCTATCA TATTACTTGT 
    AATATCATTT GTATGTTAAC GGGTAAACCA AACCAAACCG GATATTGAAC 
    TATTAAAAAT CTTGTAAATT TGACACAAAC TAATGAATAT CTAAATTATG 
    TTACTGCTAT GATAACGACC ATTTTTGTTT TTGAGAACCA TAATATAAAT 
    TACAGGTACG TGACAAGTAC TAAGTATTTA TATCCACCTT TAGTCACAGT 
    ACCAATATTG CGCCTACCGG GCAACGTGAA CGTGATCATC AAATCAAAGT 
    AGTTACCAAA CGCTTTGATC TCGATAAAAC TAAAAGCTGA CACGTCTTGC 
    TGTTTCTTAA TTTATTTCTC TTACAACGAC AATTTTGAGA AATATGAAAT 
    TTTTATATCG AAAGGGAACA GTCCTTATCA TTTGCTCCCA TCACTTGCTT 
    TTGTCTAGTT ACAACTGGAA ATCGAAGAGA AGTATTACAA AAACATTTTT 
    CTCGTCATTT ATAAAAAAAT GACAAAAAAT TAAATAGAGA GCAAAGCAAG 
    AGCGTTTGGG TGACGTTGGT CTCTTCATTA ACTCCTCTCA TCTACCCCTT 
    CCTCTGTTCG CCTTTATATC CTTCACCTTC CCTCTCTCAT CTTCATTAAC 
    TCATCTTCAA AAATACCCTA ATCACA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3696679 [Map]; Strand: w
      • AT3G11690.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 201; Region: intergenic
      • AT3G11700.1 - [+] show detail - FASCICLIN-like arabinogalactan protein 18 precursor
        Distance: -2160; Region: intergenic
    Flanking Genome Sequence: ET13121 - 5-prime edge 
    TAAAAAGATA AAGACAAGAT TCAAAGGGCA AAAGGAGAGT CTAGGGTTTA 
    AAAAAACAAG TGGGGAGCTG TCCTTTTCTT TCAAGGGGGT TTGGAACTTG 
    TAGCCTTGTA GGTTGTGATG TAAACTATGA GGACCACAAC AATCAATCAG 
    TACTTGGTCA TTAGTGTTAA GCATTAATTC AGGAGTTGCT AACAACTACT 
    ACCACCTTCT TCTTCTGCAT CTCTCTAATG ACTCTTCTTT CCTTTTTCAT 
    CTCTGTTTTT TTTTTTTGGA AAATTTAACC CGGTTTGGGG GGGTCAAATT 
    GGCCTTTTAA ATTTACCCCA AAAATCCGCT TTGAGGGGGC CCCATCCCAT 
    TTTTTTCTTT TTTGGGGGAA AC

AT1G68530.1

Model type
Protein coding
Short Description
3-ketoacyl-CoA synthase 6
Curator Summary
Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational Description
3-ketoacyl-CoA synthase 6 (KCS6); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: in 7 processes; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 5 (TAIR:AT1G25450.1); Has 4523 Blast hits to 4503 proteins in 1079 species: Archae - 0; Bacteria - 1483; Metazoa - 0; Fungi - 25; Plants - 2866; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G68530.2

Model type
Protein coding
Short Description
3-ketoacyl-CoA synthase 6
Curator Summary
Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational Description
3-ketoacyl-CoA synthase 6 (KCS6); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: in 7 processes; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 5 (TAIR:AT1G25450.1); Has 1620 Blast hits to 1616 proteins in 389 species: Archae - 0; Bacteria - 691; Metazoa - 0; Fungi - 0; Plants - 849; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G06822.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT2G06822
Link
InterPro Scan - TAIR

AT2G06830.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)
Link
InterPro Scan - TAIR

AT3G11690.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11700.1

Model type
Protein coding
Short Description
FASCICLIN-like arabinogalactan protein 18 precursor
Computational Description
FASCICLIN-like arabinogalactan protein 18 precursor (FLA18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone, cell adhesion; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 17 precursor (TAIR:AT5G06390.1); Has 488 Blast hits to 470 proteins in 128 species: Archae - 2; Bacteria - 195; Metazoa - 32; Fungi - 4; Plants - 192; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Link
InterPro Scan - TAIR