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ET13123

CSHL Arabidopsis genetrap mutant lines

Original: ET13123

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13123

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26444677 [Map]; Strand: w
      • AT1G70210.1 - [+] show detail - CYCLIN D1;1
        Distance: 1848; Region: intergenic
      • AT1G70220.1 - [+] show detail - RNA-processing, Lsm domain
        Distance: 1459; Region: intergenic
    Flanking Genome Sequence: ET13123 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTA CATGACTACA 
    TGTGTATGTA AAGTAATACT AATAAATCTG CCCATTTTCT ATAAATTAAA 
    ATGAATGCAA CTCCTGTCAT ATAATTTCAT TGTTTTGTCT CTACCCCATT 
    CCCATTAGTT GTCATTATCC ATTATTCTAT AAGAAAATTA ATGTATATTC 
    TGTTTGAGAA ACCAAGTGCT CGTGAAGTGT ATGATACAAA AAGGTATGCA 
    ACTAATGGCA AACGCGTGTA CCAAATAACA GGACAAGGAT CAATTAAGAT 
    AGTAATTAAA AGATGATTGT CTTTATACGC TGATATATAA GCTTAGGTCC 
    CTTTGTGTCC CCGTGTGTCC TAATCAAAAC CCGCAAGAGA ATTAAAATAA 
    ATAAAAAGTT AATAAACAAT GATAAAGGTA ATCCCCCGAT GATTAATATG 
    TCCAAATGTG TGGGCTGGTC ATTATTTATT TATAATTAGC ATTTAGCAGT 
    TGCTAATCAC CTAACCATAG TCTCTCTTTA CTTTTGCATC ATTTTAGATT 
    AAATAGTAGT GGGTGAAGCT TCTATTCTTT CTCTTATAAA GATATTTTGT 
    ATTTATATTC CTGCAATAGT TATCTTGTAC GTATTTATTT ATAACTCCAT 
    CTGTCCCCCC CCCTCAGGGT TGTCATGTCA TATTGATGCT CTGCTCTTAC 
    ACATAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26241302 [Map]; Strand: c
      • AT1G69760.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -594; Region: promoter
    Flanking Genome Sequence: ET13123 - 5-prime edge 
    CCTACTTTCT CTAATTGCTT TGTTAGAAGT TTTATAAATT CGATTGGTGA 
    CAGAAAGTGA TATAATTATT TTATTAGTAC GAAAAAAGTC GATAGAAGAT 
    GATAAAAATT CGGTTAGAAG TGATTAAAAT AATGGTACGA AAGTTTATGA 
    ATTCGATTGG TGACAGAAAG TGATATATTT ATTTTAGTTG TACGAAATAT 
    CGATAGAAGA TAATACAGTT AGAAGTACTT AAATTAATGG TACGATAAAA 
    ACAATGACAC TAATCTCTTC GTACCAGAAA TTTATTAACC GTCTCACTAG 
    ATGATACAGA AGAGAAGACA GTCACGTACA AGTACAACGT TAGCGGTCAA 
    AGCTATAAGA TTATCATAAG TCAAAAGTAC AACATGCTTA AGATCTAAAC 
    AATATTTTTA TAATAGAAAT AAAATAACTG AATAGGAGTA TTATACTAAT 
    CGTGACGAGA CGACAAATTG TAGACCATGT ATTTAAAATT TGCCTCCGGG 
    TTATGCGAAA AAAGGAAAAA GCATTCACAT GTCTCTCTCC TGACATGCAC 
    GAACCAACTA ATAACTTCTT ATTATACTAA TCACGTTATT ATCTTATTAA 
    AAAATAAACC CATTTTGACC ACAACCTTTC TCTATATAAA CATTTTAGTC 
    TCCTCCTCTC TCTCTATAAC CACAACGATT TTCTCTCTCT CACGATTTAA 
    AAAGCTAAAC AAAAACCATT GGTTTCTCTA TCTTTCTTCT CCAAAAAATG 
    GCAGAAACAA CAACAGTAAC CATCTTCATT GAAGCGTCAA AGAGATG

AT1G69760.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26920.1); Has 51 Blast hits to 51 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70210.1

Model type
Protein coding
Short Description
CYCLIN D1;1
Curator Summary
Encodes a D-type cyclin that physically interacts with CDC2A. Its expression is upregulated early during germination.
Computational Description
CYCLIN D1;1 (CYCD1;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: G1 phase of mitotic cell cycle, regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin D2;1 (TAIR:AT2G22490.1); Has 3455 Blast hits to 3453 proteins in 343 species: Archae - 0; Bacteria - 0; Metazoa - 1586; Fungi - 382; Plants - 1073; Viruses - 13; Other Eukaryotes - 401 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70220.1

Model type
Protein coding
Short Description
RNA-processing, Lsm domain
Computational Description
RNA-processing, Lsm domain; CONTAINS InterPro DOMAIN/s: RNA-processing, Lsm domain (InterPro:IPR019181); BEST Arabidopsis thaliana protein match is: RNA-processing, Lsm domain (TAIR:AT1G24050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR