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ET13125

CSHL Arabidopsis genetrap mutant lines

Original: ET13125

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13125

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16172201 [Map]; Strand: c
      • AT2G38670.1 - [+] show detail - phosphorylethanolamine cytidylyltransferase 1
        Distance: 283; Region: intergenic
      • AT2G38680.1 - [+] show detail - 5'-nucleotidases;magnesium ion binding
        Distance: 1810; Region: intergenic
    Flanking Genome Sequence: ET13125 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CATGATAACC GTCTACTAGA 
    ACAATTGTAT ATTATTTATA GCTTGATATT TTCTTTTGGA ATACCAACAT 
    TTTTAACTTA CACTCATAAG TTTGGCATAC TCAAAAAACT ACGAGACCAT 
    GAGATACTGA ATATACATCC GACAATTTTT GGCAATTGTT TGATAATTTT 
    TCATCTGAAC TGAACATTGT TTGTGTTATC AATTCATATG AAGACAATAT 
    ATTAGGTGAG AGTCATCCAA CCAATCATCT TTTCATATAC AATACATATG 
    AGGTTCAATA TAACAAAAAC TATACTTTTT CAAAACAAAT TCATACATAT 
    TCTTTAAAAA TATACCATGA TTATTCTAAA ATATTCAGAC TACTACTATT 
    AATATTATAT ATTGTTATAT GATTAAGTAT AAATCGAGAT TTCTGATGTA 
    AGCCATGCAC AGATACTGAA CATGGGGACT TAGATGGACC AACTACCATA 
    CTAAAAACAC TTCATGATAT ACAATTTGTC TCCCTCTAAA CCAATACGCT 
    CACCACAACT GCTTTTTCAA CCACCTCGGC GTTGATTCTC TTATAAACAT 
    CTATGATCAC CTCATGATAA T

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16123251 [Map]; Strand: w
      • AT2G38510.1 - [+] show detail - MATE efflux family protein
        Distance: -734; Region: promoter
    Flanking Genome Sequence: ET13125 - 5-prime edge 
    TCCTACTTTC TTGAAATGAA AGGAATATCT AAGCTGATTT TGTTTTTTCA 
    AAAGAAAACA AAAAAGGTGA GCTTTTAAAA ACCCATGATG ATTTTTATTT 
    AAAAAGATCC TAGAATGTTG GTACAGTTAG CCATTCGCTT TTCTGGCACT 
    TGTGAATTTG ATTATATATT CAGTTCTAAA AGTTATAGAA TTTAAACCTT 
    TTTCTCTTCC TTTTTCTCCT CACTCGACCA AGTCCCAGTG GCCATGTGAT 
    GCGACCATCT TCCTCGTGCT TACAAATTGT TCTTAATTTT ATAATATGAT 
    AAAATATCAT TTTCCGTATT GTAATGTAAT GTCCTTCTGT TTCACAATAA 
    AATTAATTTA AGATTTTATT TGACAAAAAG AAACAATTAA GGTACAATGA 
    TTTTTTTAAT AACTCATGTA TAAAAAGCTC ATATAAATAC CATTTTCATA 
    CAACTTATTA GAAAAGAAAT TTGTTTGTTT ATTGTGATAA AAATATTAAT 
    AAATGATATA CCAGAAAATT TAATATTTTT AGTGAGTGCA ATATCGTTAA 
    TTAAACGAAA TTAAATCACG TACAAAATAT TAAACATGAT TAAAAAAGGA 
    TATTAAAGAC TAAATCATAT TTTGA

AT2G38510.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G58340.1); Has 11945 Blast hits to 11897 proteins in 2040 species: Archae - 292; Bacteria - 8615; Metazoa - 143; Fungi - 328; Plants - 1321; Viruses - 0; Other Eukaryotes - 1246 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G38670.1

Model type
Protein coding
Short Description
phosphorylethanolamine cytidylyltransferase 1
Curator Summary
Encodes a mitochondrial ethanolamine-phosphate cytidylyltransferase, involved in phosphatidylethanolamine (PE) biosynthesis.
Computational Description
phosphorylethanolamine cytidylyltransferase 1 (PECT1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidyltransferase-related (InterPro:IPR004821), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: phosphorylcholine cytidylyltransferase (TAIR:AT2G32260.1); Has 10984 Blast hits to 6001 proteins in 1666 species: Archae - 316; Bacteria - 5963; Metazoa - 682; Fungi - 448; Plants - 283; Viruses - 6; Other Eukaryotes - 3286 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G38680.1

Model type
Protein coding
Short Description
5'-nucleotidases;magnesium ion binding
Computational Description
5'-nucleotidases;magnesium ion binding; FUNCTIONS IN: magnesium ion binding, 5'-nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IE (InterPro:IPR006434); Has 332 Blast hits to 332 proteins in 84 species: Archae - 4; Bacteria - 0; Metazoa - 264; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Link
InterPro Scan - TAIR