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ET13149

CSHL Arabidopsis genetrap mutant lines

Original: ET13149

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13149

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11819149 [Map]; Strand: w
      • AT4G22410.1 - [+] show detail - Ubiquitin C-terminal hydrolases superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: ET13149 - 5-prime edge
    CTTTCTCCCT GATAACTCTA CTGGATCTGA TTGTTGGCCA ATCCGAAAGC 
    GTTTCTTGCT GGCTTTCATG ACAGCTTGCA AGAACTCATG TGGACTCACC
    TGTTGATGCA AGGTAACTTA AATTAGTGAG GTCTTCAATA GGTGAGGGCA
    TAACAAAAAC TAAAAAAGTA AGAGGCAAAA TTGAGTCAGA CCTGTCCTTT
    AAAGTTTCGA GCATGCCAAA TCTTGCGAGT TAGTTCCCCA AAACAGTGAA
    CAAGAGGAGA CTTGCAGTGC TGATAATTTT CAGGAATGTG GAAGAAATTC
    CTTAAAGGAG TAACTCTCAT CAACGACGGG ATTGTAACAT TCACAAACTC
    TGTCTTTTGT ATGTTGTTCA ACCCCACCTA CATATTTACA AGCTAAACCG
    TTAGGAGACA AATTAATTTA AAGATCAAGT GTAATCAAAG AGAAAGGATT
    ACCATTCCTG GAAGATAGTC GGAGCCATCA AGAGCCCTAG ACCACTG

AT4G22410.1

Model type
Protein coding
Short Description
Ubiquitin C-terminal hydrolases superfamily protein
Computational Description
Ubiquitin C-terminal hydrolases superfamily protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: Ubiquitin C-terminal hydrolases superfamily protein (TAIR:AT4G22285.1); Has 1861 Blast hits to 1844 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 1101; Fungi - 318; Plants - 235; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).
Link
InterPro Scan - TAIR