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ET13165

CSHL Arabidopsis genetrap mutant lines

Original: ET13165

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13165

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26256423 [Map]; Strand: c
      • AT1G69770.1 - [+] show detail - chromomethylase 3
        Distance: -2838; Region: intergenic
      • AT1G69780.1 - [+] show detail - Homeobox-leucine zipper protein family
        Distance: -2516; Region: intergenic
    Flanking Genome Sequence: ET13165 - 5-prime edge 
    CCTACTTTAT CCCTGCATAA GAGCTGTTCT ATCTTGTCTC TCCCTCCTTT 
    CCTCTTCCAT TCCTTTCCAT AATCAATCTT TCTTTTTATT TTATTTTATT 
    ATTTTCTTAA TTTCTCTTCC CAACATCCCT TGTGGCGTAT TCATCGATGA 
    TGTTTACTCT AACATCATCA ACCACATAAT TATTAACATT TTAACGTTCA 
    TCTCACTCGA CGAAAAGACT ACTATTCATT ACTTTGGGAC AACTTATCCG 
    TCTCTAACTG ACATTTCACG CATCACATCG TGCCGTTCTG CAATCAAAAC 
    TTTTGTATCA AAGGACTTTT ACTTATCCAT GCATACATAT AGCTTCACAA 
    ATACCCGAAT ATTTATGGAA TGAGGATGAT TTAATTTTTA TTTTGGATGG 
    GATGTGAATG ACCCAAAAAG TAATTTTTTT TTTGG

AT1G69770.1

Model type
Protein coding
Short Description
chromomethylase 3
Curator Summary
Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing.
Computational Description
chromomethylase 3 (CMT3); FUNCTIONS IN: DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), DNA methylase, C-5 cytosine-specific, active site (InterPro:IPR018117), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 2 (TAIR:AT4G19020.1); Has 4337 Blast hits to 3739 proteins in 974 species: Archae - 208; Bacteria - 2545; Metazoa - 230; Fungi - 161; Plants - 416; Viruses - 30; Other Eukaryotes - 747 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69780.1

Model type
Protein coding
Short Description
Homeobox-leucine zipper protein family
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description
ATHB13; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cotyledon morphogenesis, regulation of transcription, DNA-dependent, response to sucrose stimulus, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 23 (TAIR:AT1G26960.1); Has 11763 Blast hits to 11710 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9272; Fungi - 193; Plants - 2061; Viruses - 5; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR