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ET13169

CSHL Arabidopsis genetrap mutant lines

Original: ET13169

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13169

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20686601 [Map]; Strand: w
      • AT3G55730.1 - [+] show detail - myb domain protein 109
        Distance: -2548; Region: intergenic
      • AT3G55734.1 - [+] show detail - MIR393B; miRNA
        Distance: -5046; Region: intergenic
    Flanking Genome Sequence: ET13169 - 5-prime edge 
    CTTTCTCCCC TAATCTAACA CCTGACTGAG ACAACATAAT CAGTAGGTTA 
    TTAAAAGAGA TTGTATATAT ATGTGGAAAT ACCATGAGTT ATGTTTTAAC 
    CACAGTTAGT GATTCCGTTA CCAACATTAA CAGTCGTTAA CTCGGGAGTA 
    AGAAATATCC AACATTTAAA AGACCAGAGT TTTAGTAGAC AATCAAAATT 
    AACTTATGTA TTTTTCTTCC AATTTTAAAA GTATTGGTAT TAAACGGCCA 
    AATTAAAAAT AAATAAGCAT TTTTCTGGCT TTTTTCCCGA AAAAAAAAGA 
    ACAGATGGGA TAAAATTATA CTCGGATCTA CTCCGGCTAG AGAAAGGATA 
    TGGATACCCG AATCGATTTT ATTGATTTTC ACATGTGCCT CTCGTGCTTT 
    CATTCCTTTT GCAATTGTAG ACCAAAGTAT TTGAATTTAT ATGCCACCAC 
    GAGGTTGAAC GCCAGGCTAT CTTGGCAAGT CTTAATTCAA ACTAGGTCAA 
    TACCAGCACG TTTATCATAC ATAGTTTGTT AGTTATAACA ATTTACCTCG 
    AGTATATTAA TTTGATTTAG TTAATTTGAT AAATAATATT TTTGGTGTTT 
    TAAAAATCAT TTTGATTTAT ACTTTAAAGA TAACAAATTT TTATTATTAT 
    TA

AT3G55730.1

Model type
Protein coding
Short Description
myb domain protein 109
Curator Summary
putative transcription factor MYB109 (MYB109) mRNA,
Computational Description
myb domain protein 109 (MYB109); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 25 (TAIR:AT2G39880.1); Has 8907 Blast hits to 7929 proteins in 513 species: Archae - 0; Bacteria - 2; Metazoa - 870; Fungi - 593; Plants - 5452; Viruses - 6; Other Eukaryotes - 1984 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55734.1

Model type
miRNA
Short Description
MIR393B; miRNA
Curator Summary
Encodes a microRNA that targets several TIR1/AFB family members and one bHLH family member. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCCAAAGGGAUCGCAUUGAUCC. Targets are: F-box proteins and bHLH transcription factor. Specifically cleaves AFB3 transcripts, controlling AFB3 mRNA accumulation in roots in response to nitrate exposure.
Link
InterPro Scan - TAIR