1. Home
  2. Mutant Lines
  3. ET13173

ET13173

CSHL Arabidopsis genetrap mutant lines

Original: ET13173

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13173

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 224045 [Map]; Strand: w
      • AT2G01490.1 - [+] show detail - phytanoyl-CoA dioxygenase (PhyH) family protein
        Distance: 627; Region: intergenic
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 111; Region: intergenic
    Flanking Genome Sequence: ET13173 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACTGACAT TGCACTGTGT 
    TTAGAACCAC TTTAGATTTT TCAGAGAATT TAGCAAATGT GAGGTTTATT 
    ATCAAAAAAG TGCGTACCGT TGAGGCTACA TTTGAGTTTT GATGGAATGA 
    AGACAAAACA TCTTTAATGT TTTGCCTATT CCTCATTTAT TTTTTGAATT 
    TAATGGAAAC AAAAGAGTTT ACTCATAGAT ATGTGTTGTT CAAATGGTCT 
    TTAATCACAT AAAGGATTAC TCATAATGTC TATAGTTTCC GAGGGTTTTT 
    GTGCAAAATC CTGAAATAAT AATTTAACAG AAACAGAACA TCGACCCATC 
    TTTTGTACTT TTAAGATCAT GAATGTATGA CAAATTGCTT TCTGAGAGAG 
    AGAGGATCAA GAACACTTCC AAAAGACAAC TACACAAAGC ATTTATCACT 
    ACGACCATAA CTCTTTAATT GACTCTATTG TTTCTGCAAC TCAAAAGATC 
    TCTGTCCCAC GTTTTCTTTT GCCCTGGTAC AATTACGATA GGACAGAGAT 
    AGTTTTGTCC CATTCCTCCA ATCACAATAA CATTTCAAAC AAAATCCAAA 
    GGTCACTTAT TTCCCAAACT TTCTTCTACC TCTTTAACTG TTTATG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9560957 [Map]; Strand: w
      • AT5G27150.1 - [+] show detail - Na+/H+ exchanger 1
        Distance: 3444; Region: intergenic
      • AT5G27160.1 - [+] show detail - transposable element gene
        Distance: -1639; Region: intergenic
    Flanking Genome Sequence: ET13173 - 5-prime edge 
    CTTTCTCCTG AAATACACGA TGCAAAAATC TCATCTTTTG TATCAATTTT 
    TTTTTAATAT TTTATTTCCT AGGTTACCGC CAACCCTTCG AATCAAACAA 
    TGTCAATCCC CCCGCCTCCG CCCCTTTTTG GAACTTAATG CATCATTTTT 
    ATCATATGAT ATAAGTTTGT TGATGTATAC CTGAAAAGTA ATATCTTTTA 
    AAGATTTAGG AAAATTGCTA ATTTCGCATG TTTGGTTTAT CATATAAATC 
    CTTTGGTTCC CGGGGTAATC CGAATTATAT ATATTCTCAT CTTTGAAATC 
    AATAAATTCC AATTCACAGT AGGATCCTTC TACCGGTTTC ATCCGGTTCT 
    CCTCTCGCTT TAGCGAAATT TGATCTTACT CCATTTTCGT TCTATCCACT 
    CAACAAGGGT TTTCTTCAAA GATTTCTCTG TTTTCTCCAA CTGATCGAGG 
    AGTAATATCT TCATCGCTTC CTTTGCTCTA GACGCAAGAG CAACTTGGAT 
    TCAGATCTAC ATCAAGATGG GGTTTAGACG G

AT2G01490.1

Model type
Protein coding
Short Description
phytanoyl-CoA dioxygenase (PhyH) family protein
Computational Description
phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2926 Blast hits to 2921 proteins in 334 species: Archae - 4; Bacteria - 485; Metazoa - 347; Fungi - 101; Plants - 64; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01500.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Computational Description
PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 564 Blast hits to 564 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G27150.1

Model type
Protein coding
Short Description
Na+/H+ exchanger 1
Curator Summary
Encodes a vacuolar sodium/proton antiporter involved in salt tolerance, ion homeostasis, and leaf development.
Computational Description
Na+/H+ exchanger 1 (NHX1); FUNCTIONS IN: protein binding, sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: response to salt stress, lithium ion transport, sodium ion transport, leaf development; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 1-4, conserved region (InterPro:IPR018407); BEST Arabidopsis thaliana protein match is: sodium hydrogen exchanger 2 (TAIR:AT3G05030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G27160.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07520.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001067658.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)
Link
InterPro Scan - TAIR