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ET13192

CSHL Arabidopsis genetrap mutant lines

Original: ET13192

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13192

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26346266 [Map]; Strand: c
      • AT5G65840.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: -184; Region: promoter
      • AT5G65850.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: -48; Region: promoter
    Flanking Genome Sequence: ET13192 - 3-prime edge 
    ATGAAACGGT AGAGGTTTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    GTCTTCCCCA TAAACTCTCA GTCTCTAGGG TTTTAACCGT CGGCGTATCC 
    GCCATGAGAA CACTGCGGAG AAATGTTACG GAGAATCTTC TTACCATCTC 
    CCGGCGTAGA ACGGAGAAGA AGACCTCACC GAATAAAACA GAAAAGTCAG 
    TCCAGATCCC AGTTGATATC ATCATCGAGA TACTCCTGAG ATTACCGGCG 
    AAATCTATAG CGACATGTCG TTGCGTGTCG AACCTCTGGA TCTCCGTAAT 
    TTGCCGTCAA GATTTCACAG AGCTGTTCTT GACCAGATCT TTGCATCGAC 
    CGCAACTCTT ATTCTCCTGC ATAAAAGATG GTAACTTGTT C

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26346214 [Map]; Strand: c
      • AT5G65840.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: -132; Region: promoter
      • AT5G65850.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: -100; Region: promoter
    Flanking Genome Sequence: ET13192 - 5-prime edge 
    CTACTTTCTC CCTGGGGAAG ACGAACCAAT TTGGATGAGA AAATCGAAAG 
    CAATTTTCGT AATTTTGTTT TAATGGACTT GGATTTGAAT TGGGCTTTCA 
    AAATAAATAT GGGCTTTTAA CTAAAAACGA CGCCGGATAC ATTCTCGGTC 
    CATTATTCGC CACGTGTTTA ATTTCTAGAT GCTCTTGTTC TTATTCATCT 
    CACTCGACCA ANAAGCCNAA TTGAGTTTAT GATTTTGGTT TCTGAATCAC 
    CAATGGCGAT TCTCTCTCTA CGATCTTCGA GCTCATTGCC ACTTATTTGT 
    TCCACAATTT CTCCTCTGTG CTCGAAACCC ATGTTGT

AT5G65840.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Computational Description
Thioredoxin superfamily protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G37240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65850.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G31470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR