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ET13202

CSHL Arabidopsis genetrap mutant lines

Original: ET13202

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13202

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15095038 [Map]; Strand: c
      • AT2G35945.1 - [+] show detail - other RNA
        Distance: 3274; Region: intergenic
      • AT2G35950.1 - [+] show detail - embryo sac development arrest 12
        Distance: -9723; Region: intergenic
    Flanking Genome Sequence: ET13202 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACAGGT 
    TAGACACCAA ACTAGCTAGA TTTTGAGCGT GCAGTTGTTA CATAACATAC 
    GTAATGTGGC TTGGTTTAAA TTTTATCATC AATAAGCCAA TATTCACGGT 
    GTTATAGTGG TCATTACTAT TCGTCGGGTG TGTATTAAAT ACTCCTAAAA 
    TAAGCCCATT TACGCATAAT TAGTTTTACT CCAATATAAA TTAATCTGGA 
    TTGTCTTCTC ATTGCGATCG GGTTTGGCAT GTTATATGCC TTTGACTAAG 
    TACTGTTTTT TCTTTCTTTA TGTCATACGA ATTTGTAATA TTCGCCATCA 
    ACTTGTGTTA TTTTTTGTTC AAAAATAATG AAGAAAACTA TTTTAGAGGA 
    AGAAATCAAA CAAATTAGTC AACAAAAATC TTCTAAATCT GTATTTTCTG 
    AGTTTTCATA GTTTCAACAA TTTCATCAGT TTACAATATG TTATTAGAAC 
    AACTAGTCGA ACATTTCATG TTTTTTTCTG TGTGAAATTT CTGAGTTTTT 
    TTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22367539 [Map]; Strand: w
      • AT3G60520.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -4960; Region: intergenic
      • AT3G60530.1 - [+] show detail - GATA transcription factor 4
        Distance: -5676; Region: intergenic
    Flanking Genome Sequence: ET13202 - 5-prime edge 
    TTTCCATCCT ACTTTATCCA CTTAAAATGT CCCCCAAGTG GTCGTCGTTG 
    TCGCATTCAA TGGAGGTTGG GCCCCACGGC CCATAATTAT ATTCACAATA 
    CAAACAGAAG CCCATTTCAC ATCACCTTCT CGCTATCTTG TTGTCTTCAA 
    AACTGTTGAA CTTGACGTGG AAACAAACGA AACCGAAAAA GCTTGCGTGG 
    CTAAATCATT GACGTGTACT TTTAGTACTT CACTGGGGCA AGTCTTCCGC 
    TGCAGATTCC AAATATTCAA TGAAATACAT TCGTTCTAAC TGGTTTTACT 
    ACTAAATTCT ATGCTTTGAA ATAAATCTAG TTTACACCAC AATGGTTTTA 
    TTTCACGGAC GTCAATAAAA GTCGTGGAAT CAATCTTTTA TTTTGTGTTT 
    ACTACAACAT AATCAGATTT TTTGTTTCGT TTTGTTCTGG AACGGTTCTA 
    AGCAAAGAAT ACATAATCAG ATTCTTATTA CTCCGATGAA TTCAAAAAGT 
    AATATGTAGC CATTTATGTT ATAGCACAGG AACGAAATAG ATTATTGAAA 
    AAAAAA

AT2G35945.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT2G35940
Link
InterPro Scan - TAIR

AT2G35950.1

Model type
Protein coding
Short Description
embryo sac development arrest 12
Computational Description
embryo sac development arrest 12 (EDA12); Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60520.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60530.1

Model type
Protein coding
Short Description
GATA transcription factor 4
Curator Summary
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational Description
GATA transcription factor 4 (GATA4); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 2 (TAIR:AT2G45050.1); Has 1515 Blast hits to 1478 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 592; Plants - 818; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Link
InterPro Scan - TAIR