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ET13205

CSHL Arabidopsis genetrap mutant lines

Original: ET13205

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET13205

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26164952 [Map]; Strand: w
      • AT1G69572.1 - [+] show detail - other RNA
        Distance: 2191; Region: intergenic
      • AT1G69580.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -6991; Region: intergenic
    Flanking Genome Sequence: ET13205 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTCATG GAACATCTAT 
    TATCTTACTT TTCGATCGTA ACTGCACACA ACAAATAGTA ACACGCAACT 
    ATCGGAATAG TGGAAAATAA GTAGGGATAC ATAATTGCAA ATTATGAAAC 
    AAATGTTATA AAATAAACAA AAGAAAACAC GATCGAAAAG ACTTAACGGG 
    ATAAGAGAAA AAGATATGGT CCAGCCTTAT CTCTTACCTG GAAATTGCCA 
    CGTGTCAGAC ACAACCAGAA CATAGCCTCT CTTGCTACCA CAAACATTTC 
    TTCAAATCTT TTTTGATTAC TTTTCCATTA ATTTAAAGAA CACACATTGA 
    TGCTTTTGTT ATGTTGGATA CGCTACTACA AAACCCTACA CCAGAAAATA 
    TGTTCATATT AAATCCACGT GTCGGATAAT CATTGGTCAC ATGCTTGACG 
    AACAGCTAGA TTCTGGCAGA CGAACCTTTT TAAGAGTTGT GAGTTGTGAT 
    GGACCAACCC ACACGTGGTG TATTACAGCT GACGTGGGCT TAGATGTAGG 
    ATGTTTCGGA GACTGTGTGG GTCATGTGCC ACGTGTTTAC ACAGCTTGGC 
    ATTGATAGTT TTATGCCTTG TCGGATTTAC ATGTAATAAT CATGTCAGAT 
    ATGTATTTGT ACCTAATTCT GTCTAGAGGA GATAGAATTT TCAGATGTTG 
    ATTTGCAATT GTATTAACAT CAGTTCTGAT TGGCAACCCT ATACTGTTGT 
    GGTAGGGGAT TTATCGTTCT ATTACCCACA ACAAAAGTGT TATCAAAACG 
    TTATTCTCAG TTTTTTTCGC ATTGCTTTCT ATTACAATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26248760 [Map]; Strand: w
      • AT1G69770.1 - [+] show detail - chromomethylase 3
        Distance: 0; Region: exon20 (CDS)
    Flanking Genome Sequence: ET13205 - 5-prime edge 
    TTAAGAACTA TAGCAGCCAA TAAATCCACC AAGAACACAT AAACTCAAGG 
    TCTTAACAAT ACTCACTTCT GTTTGGGTGG GCCAAAGAGT TTGGAGTCAT 
    CAAGAAAGCC TTGGAGTCTC GCATTTTCTC CAATGGATAA AACCCGATTT 
    TGCTCTGGAT GAAAGATC

AT1G69572.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G69570
Link
InterPro Scan - TAIR

AT1G69580.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04030.3); Has 1694 Blast hits to 1678 proteins in 70 species: Archae - 0; Bacteria - 6; Metazoa - 10; Fungi - 0; Plants - 1653; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69770.1

Model type
Protein coding
Short Description
chromomethylase 3
Curator Summary
Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing.
Computational Description
chromomethylase 3 (CMT3); FUNCTIONS IN: DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), DNA methylase, C-5 cytosine-specific, active site (InterPro:IPR018117), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 2 (TAIR:AT4G19020.1); Has 4337 Blast hits to 3739 proteins in 974 species: Archae - 208; Bacteria - 2545; Metazoa - 230; Fungi - 161; Plants - 416; Viruses - 30; Other Eukaryotes - 747 (source: NCBI BLink).
Link
InterPro Scan - TAIR