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ET13215

CSHL Arabidopsis genetrap mutant lines

Original: ET13215

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13215

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29842009 [Map]; Strand: c
      • AT1G79340.1 - [+] show detail - metacaspase 4
        Distance: -762; Region: promoter
    Flanking Genome Sequence: ET13215 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCACGA TCATGCATTA 
    TAAATAGAAA TAGATGATAA ATTGTGTATC ATCGACGAAG AAGAAGAAAA 
    AGAAGGTGAA TAGAGAATTT TGATTTCTCA AGAATGAAGA AGAAGAAGAG 
    AATGCGTGAG GGTTATTTTG ATTTCTCAAG AATGAAGAAG AAGAGGAAGC 
    GAATGTGTGA GGGTGTATTT ATAAGCAAAC AAGGTTCTTG GTTTATTTCC 
    TTTTTCCCTT AAGCGTATCT TTGCGATTTC ATATACTTTT TATTAATATA 
    ACCGTTGGGG ATCATATTTA TTAATCTAAC CGTTGGGATT ATAGAGGAAA 
    TTTAAATTTT GATCCGGTTT CCATTTTTTT GATGACTTTG GTTTGTTTTC 
    CTATTACTAA TTTTGATTTG GTTAGCTGAG AGCCTGACTG AGAGGCTTTG 
    TTGATGACCC TTTTGTCTTG GAGATGACAA TGAGCATCAA ACCCAGGCGT 
    GTTAATTAAA CGGCTCCGTT TACAAGTTGG GCCGAAATTA GGCCTCTTGT 
    TGGGCTTAAA CCTGATTAGT TTTTCTTATA AATAACGTTT TTTTTTGTTT 
    TGGTAAAAAT AATAATGCTC GTTTGTGAGT CAGTGACTAG TCGTCGTGAA 
    ATAACGTGAC AATTAAAAAA AATCAAACAA ATCCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 12617245 [Map]; Strand: c
      • AT5G33382.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13215 - 5-prime edge 
    CTTTATCCCT GTTACCAATT TACACAACGC TCCTTTCTCT TTGTCATCGA 
    CACGGTAACG TGGTTTGGTG TGAACAGCAA ACGACGTCAC TCAGGTTTTT 
    CTTCTCCTCC ACTGATACGA AGATCTTCCT CTTGTCTCAC AATATTATAG 
    ACCTCCTCTA GAGGCTGCAC AGGAACCCGA GCAACAAGGC TTGAGCGAAC 
    CGCCCGATAT TGTTCATCAA GTCCACACAA AAACTGATGT ACCTTGTCTT 
    CTTCACGATC TGTCTCTTGT GCCGTAGCAA GATCACAAGT ACACAACCCA 
    CACTTGCAAG TTCTGATCGG ACGATAGCTT GCGAGACTAT CCCAAATTTG 
    AGTCAATTTT CCATAATATG CCTCAATAGC AATACCTCTC TGTTTGCAAC 
    ACGCCAATTC AGCTTTGATC TGCTGAATCC GAGCACCGTT GATCACAGCA 
    AAACGTTTCT TCAGGTAGTC CCACAAATCC TTTGCCACGT CTCTGTGAGA 
    GATGGTCGAA CGTAACATCG GATCA

AT1G79340.1

Model type
Protein coding
Short Description
metacaspase 4
Computational Description
metacaspase 4 (MC4); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 5 (TAIR:AT1G79330.1); Has 1195 Blast hits to 1161 proteins in 285 species: Archae - 6; Bacteria - 340; Metazoa - 3; Fungi - 271; Plants - 332; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G33382.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.3e-126 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)
Link
InterPro Scan - TAIR