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ET13220

CSHL Arabidopsis genetrap mutant lines

Original: ET13220

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13220

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3819468 [Map]; Strand: c
      • AT5G11850.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: ET13220 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACCCGGAG 
    CACCCATTAA ATCAATAATG TATTCACTGC ATGTGAAGAA CGAATTAGGA 
    CTGCAAAAAT CACTACCATC ACATACAAAC TGAGCCTAAT ATCAGGAATC 
    TAGAATGCAA ACAATCAAAG AATACCTTTT GTCATCTAGT TTAATCAAGT 
    TCACAGCCCC ATCATCAGTT CCAGTGTAGT AACTGCCTTT TACCAACATA 
    CATGGGAGAT TAATCTTATC AGCAAGGACC TAGAAAAAAG AAAAGGATGG 
    GAGTAATTAG CTTCACCGTA CATCTTCTAA CCGTGACCAA AAAAGGAACT 
    CAGCGATGAA AAAGGAAATA ATGAGTGTTG CCACTAGAAT CCCCAAATAA 
    GATAACCAAG CGATTTAAGA CCAAAGAAAG AAACAAGTAA GAGGATTTGT 
    TATAAACCTT GAAAAGCAAA GCCCTGTGTC GTGCAAGACC AACATTAACT 
    CGACCAAGTG GAAGAATAGT AGTGTTCAAA GAATTTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18687819 [Map]; Strand: w
      • AT3G50380.1 - [+] show detail - Protein of unknown function (DUF1162)
        Distance: 0; Region: intron33 (CDS)
    Flanking Genome Sequence: ET13220 - 5-prime edge 
    TCCTACTTTC TCGATAGCTG CAACATGGTA TTTGCATAAG AGGTTGAATG 
    GAAAAAGCTA GAAAATTCAT CAGCCATATA CTATATGATA CTTACAGTTT 
    TCCCAAGATC ACCAAAGTAA CGTCTTGTCC CTGACAATCC TTTGTTGTCA 
    ATAAGTTTGC TGAGGAGTTT GAAGGTGCCT ACAACAGATA GAAGCAAATT 
    ATATTTCCAC CTTAATTGAG ATTTAATACA TATGGAAGCC AAAATTTAAG 
    GTAATGATAC CACGAATGGT CATTGCTTAC CCACTGTCAA ACCAGGGACG 
    TTCACCAAGC CACGAGAAGG ATCAAAAAAG GCATCAAGAG AGGACGATGA 
    AAAATCATCA AACATGGATG CGAAAGCTGG AGGAAGCAAC GGACTGCCCT 
    TTGCTATGTA GATTGCTCTC ATTGCATACC TAGGGAGCAC TTATGCAAGT 
    TAATAATATC TAAAAACAGA GGGCAGATAA CTTCGGAGCT TTTAGCATAG 
    AAACAAAAGA TGATACCATG AGTAATGTTT TACACATCGG AGAAGTAGTT 
    CGCGAACAGT TATTAAAGCA TGAGTGACCA ATACAC

AT3G50380.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1162)
Computational Description
INVOLVED IN: protein localization; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein (InterPro:IPR009543); Has 365 Blast hits to 355 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 111; Plants - 61; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11850.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein tyrosine kinase family protein (TAIR:AT1G73660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR