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ET13221

CSHL Arabidopsis genetrap mutant lines

Original: ET13221

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13221

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 396160 [Map]; Strand: c
      • AT5G02030.1 - [+] show detail - POX (plant homeobox) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13221 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGTTC CCGGTGTTGT 
    TAACTCCGGA TTCTGTAGAT CTGCCGGTGA AGCCAACGCC GCCGCCGTCA 
    CCATCGCGTC TAGAAGCTCT GGTCCTCTCG GACCTTTCAC GGGCTACGCG 
    TCGATTCTTA AAGGATCAAG GTTCTTGAAA CCAGCACAGA TGCTTCTTGA 
    TGAGTTTTGT AATGTGGGTC GTGGGATTTA CACCGACAAA GTCATCGACG 
    ACGATGATTC TTCTCTGCTT TTTAATCCGA CGGTTGAGAA TCTCTGCGGT 
    GTTTCTGATG GCGGCGGAGG AGATAATGGA AAGAAAAAAT CAAAATTCAT 
    CTCCACTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4634789 [Map]; Strand: w
      • AT1G13530.1 - [+] show detail - Protein of unknown function (DUF1262)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET13221 - 5-prime edge 
    CTTTATCCCT GCTTTAACGT AGTAAAGATT GGAAGAAGGA GGCTGGTGAA 
    GAACGGGGAT GAACGCGACC GAGTCAAGCA AGACAATTCT GTCATCTCCA 
    TCTATGGTGA AATCAAAGCT TAGATAATAA ACAGAGAAGA AACAGAAACA 
    GAGTAAAGTA AAATGATTGA CAGAAAGTTA GGAGTGAAAT GACTAGTAAC 
    TAACGTCCGA TTTGGTATTT AACGGTGACT CTTGTGTTCT GAGGAAACGG 
    CAAACCATTG AGATCACAAC CAAAGCATTT GCCAAAACAG CATGTAGGCT 
    GTGATTCTTC GTCTTGAATC ACCAATACGC CGGAGTTTGG ACCTTCCGTT 
    GGAAGGAAAG TAAGCTCCGA TGGGTTTCTC TGGTATTCGG ACAAACGCTT 
    TGTTACATAC ATCTCTCCTT GATTCTTTGT TACTCAAGAT CTAACCTGTC 
    ATCGTTTATA TAAAACAAAG GATCATAAGA ACGTGCAAGG AAGTTTACTA 
    AGCTATTGTT TATAAATATA ATCTGAAGTT TGACTTAAAC ACTTGTCAGA 
    ATCTCCTGTG GATGAGTACT AACAAGTAAG AAGACAAACA AACTCTATAT 
    TTTATTCTTT CTTCACCCAA AAAGATTGAA GATAATATCA AAACACAATA 
    CACGGAAAAA ACCGAATTGA AAATGGCTAT AGATAAATCA CACTGA

AT1G13530.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1262)
Computational Description
Protein of unknown function (DUF1262); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13500.1); Has 101 Blast hits to 94 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02030.1

Model type
Protein coding
Short Description
POX (plant homeobox) family protein
Curator Summary
Mutant has additional lateral organs and phyllotaxy defect. Encodes a homeodomain transcription factor. Has sequence similarity to the Arabidopsis ovule development regulator Bell1. Binds directly to the AGAMOUS cis-regulatory element. Its localization to the nucleus is dependent on the coexpression of either STM or BP.
Computational Description
REPLUMLESS (RPL); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 8 (TAIR:AT2G27990.1); Has 5109 Blast hits to 5109 proteins in 341 species: Archae - 0; Bacteria - 2; Metazoa - 2052; Fungi - 344; Plants - 2481; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).
Link
InterPro Scan - TAIR