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ET13224

CSHL Arabidopsis genetrap mutant lines

Original: ET13224

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13224

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 389862 [Map]; Strand: c
      • AT2G01860.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (3UTR)
      • AT2G01870.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13224 - 3-prime edge 
    AATGAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TATTTTCAGG CAAAGATGAA AGTGGAAACT TAACAATGTC AGAATCAGAC 
    ATAGCAACAC TGTTTTCTTC TGGAACTGAT TCTGGTCCAT CCATGGATGG 
    TTTTATCACT GTAATGAACA AAATGTTGTA GAACAAGGTA AGAGCTAAGA 
    GAACAAAAGC TGAACTTGTG AGGAACGATC CGGAGATCTC AGGTGGTTCT 
    TCAAACATGA TTGGATCATT GTTGGTTCTG ACCACATCTG ATGATGTCTT 
    GTTGATGATT CTTGGTTTCT CATCAGCTTG AGATTCTATT TGTTGATCAA 
    GCTGTTTCAG AGCTTCTCTA GCTTTATCTC TATCGATTTG GAATGAATCT 
    TCTCTTTCAG TGGCTTGGAC AATACGCATC AAATGTCTCT

AT2G01860.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
EMBRYO DEFECTIVE 975 (EMB975); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: LATERAL ORGAN JUNCTION (TAIR:AT2G39230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01870.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR