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ET13230

CSHL Arabidopsis genetrap mutant lines

Original: ET13230

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13230

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10018598 [Map]; Strand: w
      • AT5G27990.1 - [+] show detail - Pre-rRNA-processing protein TSR2, conserved region
        Distance: 157; Region: intergenic
      • AT5G28000.1 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: -2081; Region: intergenic
    Flanking Genome Sequence: ET13230 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTGGTAT GCTTCCATGC 
    TTTTTATCCT TCTTTTTTTT GGCATGTGAC CATATTTGAC TATGGCTATG 
    CTTAATTGTG TAACTCAAAC TTTCACTGTG AAATAAATAT TCACATTCTA 
    CTAAAAAAAA AACTTTTTTC GGGAAGGGGA TGAAATGATA AAAGGGTTTC 
    TTTAGCCGCC AAAAAGGGGA TCTTTATGGG CAAGAAAATT AATATTTGAA 
    AACTCAATCT GGGGATTTTA GTTTATAAAG GGACGAAACT TAGCCTTACT 
    ACCTTAATTT TTTCAAAATA AATAACCAAG GCACCCCAAA CAAAACTGTT 
    AAACTACCCA ACCTTGGGAA TCAAAACCGG GCCAATTCCC CTTTCCCTGG 
    TTTTTTCTAA ACAAAACAAC CGTCCAGCCA TCATCGGTTA CGGGTTCATC 
    AGCAGGCAGG GTTTCTTGTT TCGGGTAAAA CCCATCCCCC ATCAGGCCAG 
    GGGTTGGATC ATCATC

AT5G27990.1

Model type
Protein coding
Short Description
Pre-rRNA-processing protein TSR2, conserved region
Computational Description
Pre-rRNA-processing protein TSR2, conserved region; CONTAINS InterPro DOMAIN/s: Pre-rRNA-processing protein TSR2, conserved region (InterPro:IPR019398); BEST Arabidopsis thaliana protein match is: Pre-rRNA-processing protein TSR2, conserved region (TAIR:AT3G22510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28000.1

Model type
Protein coding
Short Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Computational Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT5G28010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR