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ET13231

CSHL Arabidopsis genetrap mutant lines

Original: ET13231

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13231

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2136775 [Map]; Strand: c
      • AT4G04370.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -526; Region: promoter
      • AT4G04375.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13231 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATATGTA CCATTATGAG 
    AGGTTGCCCT AGACTCGTAG TTTGGAACCC GTGTACTGGT CAAACCAAGT 
    GGATTCAAAT CAATTCAAGT TGCTACTACG GCTATGCTCT TGGATCTTGG 
    CAAGACAAGG AATCAGGAAA TAATAATAGC TACAAAATAT TGAGCTATAA 
    TTATTTTGAT ATTCACAAGC AAAAAATCGC AATTTGTGAC ATGAAGTCTA 
    ATTCATGGAG GAATCTTGAC GTCACTCCGG ACTGTCGCTT ACTGAATGCT 
    AGTCTTTACA GCGTATCTTT GAAAGGAAGG ACTTACTGGT TTGTTGCTCC 
    ATTGACAACC TATCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2136703 [Map]; Strand: c
      • AT4G04370.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -454; Region: promoter
      • AT4G04375.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13231 - 5-prime edge 
    CTTTCTCCCT GGGTACTAAC AATAAGCCAT CGTAGTGCAA AACTTCCTCT 
    ATATCAGCTA AGTTTAAATA AGAATGAGAA TTGATTATGC TAAATTCACC 
    TGTTACATCC ATAGAGATTA AAGTTCAACA AATAAACCCT AAATTCCTTT 
    GTGATCGTGA GAGCTAGATA TTGTCTTACG GCTTTATCGA AGTGCTTTTT 
    TGCGAATCTT GTATCGTTGA ATAAATGGTT CCATGTTTTG CAAGTAGATC 
    GTATCTCCTC CACGATATCC TCTGGAAGTT CCGACATCGA TAGGTGCGGT 
    TTGGTTTTTT GACTTTAGGG TTTTTAGTTA CCTCCTACTC CGAAGAGTAA 
    TAATAATTCG TAATTAAAAA TAGTTTGAAA TTTTGGTTGG TTCGGTTTGG 
    TTTAGTTTGG TTCGGGTTGA TATAAACCTG ATAAGTAAAC CATTACACAA 
    ATACAATATC TTCTTCTGTG ACTGTAATAA GATTGATATG GAGACGATTT 
    CATTGTAATA GTAACCATGG AGCTATGATC AGAACTTCGT CTGTGTTAAA 
    CT

AT4G04370.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 51385 Blast hits to 13710 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 119; Plants - 50626; Viruses - 0; Other Eukaryotes - 599 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04375.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR