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ET13232

CSHL Arabidopsis genetrap mutant lines

Original: ET13232

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13232

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8921185 [Map]; Strand: w
      • AT2G20680.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13232 - 3-prime edge 
    GAGGTATTTT ACCGACCGTT ACTTCCGTTT TCATCCCTAC ATACAGAGCC 
    GTACCATCGA CCACAAACTG TGTCCCATTC CGTTTCACGA ATGCTAACTC 
    GCCCTCCGTT TTGAGACCGA ACCACAAATC TCCAAAGGAG AGATAGATAA 
    AAGTCACACA TGTAAGGAAA CCTAGAATTC ATCTCACTCG ACC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 78103 [Map]; Strand: c
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -2719; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 2330; Region: intergenic
    Flanking Genome Sequence: ET13232 - 5-prime edge 
    CGTAAAAGTA AAAAAAAAGA AAAAAAGAGA GAGATCATGT CGCTGACATA 
    CTATACATGC CTAGCTAGCT CGGTACATTT ATATATAATG TTTGTGTGTA 
    AGGTAGATTG AGATATATGA ATGGTCAAAT CGGAAATAAA ACAGTATATG 
    TTCTTAAATA AGCTTCTCCT TTGTTCAACT TTTTTGCTTT CATTTCCGTT 
    ACATGATTTC GCGATTAATT ACTTTTTATA ATTAGTCAAC TTCGACGCCT 
    TGTGTCGTCC TCGATTTTAA TGTTCTGTCT TTCTCTGCAT TCATAGTTTA 
    TCTTATTTCA TTTCATATCC TTACTTCTTT TTTCTACAAA CAATAATTTC 
    TAGACGAATT GAAACAAATT TCCAAAACTT TATGAGTATA TATAGGATAT 
    TTTTAGTGGC AAAGGACGAC TTAAATTGTA ACGAAAAGAA TTTGAACTTT 
    TTTCCATTAG TCCCTACGAT GAATATTTCA TCCTATAGAA CATCATATGA 
    ATTGATTACT TAATGAAGTT AAATTTTTGA AAACTCTATT AGGGACAATG 
    TCCCACATCG GAAGTTGAGT AGGATCTTAA

AT2G20680.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT4G28320.1); Has 827 Blast hits to 815 proteins in 205 species: Archae - 18; Bacteria - 244; Metazoa - 38; Fungi - 187; Plants - 310; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00190.1

Model type
Protein coding
Short Description
pectin methylesterase 38
Computational Description
pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR