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ET13233

CSHL Arabidopsis genetrap mutant lines

Original: ET13233

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13233

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20092699 [Map]; Strand: c
      • AT1G53820.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 276; Region: intergenic
      • AT1G53830.1 - [+] show detail - pectin methylesterase 2
        Distance: -5823; Region: intergenic
    Flanking Genome Sequence: ET13233 - 5-prime edge 
    CATCTCAGCA TTCTGTAGTT CATCTCACTC GACCATATGT TGAGAATGTG 
    ACACCTATGC TTAGAACTTC ATAAAGTCGA GACTTGCTTG ATCTGTTCCT 
    TAATATAAAC CATTACTTTT CATATAGACA TATAGTGTTA TTTAATTTGC 
    CATTGCAAGA ATTGGATTTC AAACTATATT AACCATCGTA ATCATCATCT 
    CTCTTATAAG AAAACAACTA ATGTAGATTT GAATCAAATC AAACTATACA 
    TGGGATGTTT ATGTCACACT TCTCATATAC AAAGATATAT AACCAATTCA 
    AAATTTCTCG AGATAATTCT TGAATGGGTT CAAGATTACC TATTTATTCA 
    AACATTGTTG TTGTTGGTCT TCTCTCTACT CAAAACATTC TTAAGCAATC 
    TTAACCTTGT GAACATCGGT GACTTAG

AT1G53820.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72310.1); Has 9301 Blast hits to 9282 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 2391; Fungi - 736; Plants - 4843; Viruses - 80; Other Eukaryotes - 1251 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53830.1

Model type
Protein coding
Short Description
pectin methylesterase 2
Curator Summary
encodes a pectin methylesterase
Computational Description
pectin methylesterase 2 (PME2); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: extracellular region, plant-type cell wall; EXPRESSED IN: sepal, flower, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase 3 (TAIR:AT3G14310.1); Has 3028 Blast hits to 2957 proteins in 336 species: Archae - 6; Bacteria - 620; Metazoa - 1; Fungi - 201; Plants - 2174; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR