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ET13234

CSHL Arabidopsis genetrap mutant lines

Original: ET13234

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET13234

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 224062 [Map]; Strand: w
      • AT2G01490.1 - [+] show detail - phytanoyl-CoA dioxygenase (PhyH) family protein
        Distance: 644; Region: intergenic
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 94; Region: intergenic
    Flanking Genome Sequence: ET13234 - 3-prime edge
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    CTGACATTGC ACTGTGTTTA GAACCACTTT AGATTTTTCA GAGAATTTAG
    CAAATGTGAG GTTTATTATC AAAAAAGTGC GTACCGTTGA GGCTACATTT
    GAGTTTTGAT GGAATGAAGA CAAAACATCT TTAATGTTTT GCCTATTCCT
    CATTTATTTT TTGAATTTAA TGGAAACAAA AGAGTTTACT CATAGATATG
    TGTTGTTCAA ATGGTCTTTA ATCACATAAA GGATTACTCA TAATGTCTAT
    AGTTTCCGAG GGTTTTTGTG CAAAATCCTG AAATAATAAT TTAACAGAAA
    CAGAACATCG ACCCATCTTT TGTACTTTTA AGATCATGAA TGTATGACAA
    ATTGCTTTCT GAGAGAGAGA GGATCAAGAA CACTTCCAAA AGACAACTAC
    ACAAAGCATT TATCACTACG ACCATAACTC TTTAATTGAC TCTATTGTTT
    CTGCAACTCA AAAGATCTCT GTCCCACGTT TTCTTTTGCC CTGGTACAAT
    TACGATAGGA CAGAGATAGT TTTGTCCCAT TCCTCCAATC ACAATAACAT
    TTCAAACAAA ATCCAATGGT CACTTATTTC TCAAACTTTC TTCTACCTCT
    TTAACTGTTT ATGAGTCCTT ACTCTTGTGT CTAATTA
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 224108 [Map]; Strand: w
      • AT2G01490.1 - [+] show detail - phytanoyl-CoA dioxygenase (PhyH) family protein
        Distance: 690; Region: intergenic
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 48; Region: intergenic
    Flanking Genome Sequence: ET13234 - 5-prime edge
    TCCATCCTAC TTTCTCCCTG TATGTCAGCA TCGAATGTCT CTCTCAGAGA 
    GTCGCATATA AAATTGCAGT GGAACAAGAA AAGAAAGAAG AAAGCATGTG
    AACAAGTAGA AAAACATCAA TTACTAACAA ACATCTAATT AATATATATT
    CCTTACATTG ACAAGGAACC ATCGAAGCTT TCAGTTTCAC TTTCAGACAT
    ATGTATAGAT AGTTGCAACT CCAAACCCAA GCCCCAACAT GGTCCACCTT
    CTCATTTGGG TAATAACTAA CAATAATAAT CTTCAAACGC TCCTATATAA
    CATTTACTAC ACGTCTCCAT CTTCAAACGC TTCTCTTCTA TTATAAGAAC
    ACATCACTTA CCATTCGTGG ACAAAACAAC AAATAAAACC TTCATTAAAG
    TCCTATTTAT TATTCACACA TGGGTTTTTT GTTTCAGTTC TTCAGAGGCA
    TGAACTCGTA GTAGTAACAG TAGTTGCATG CTTTCGTCTT CTCTATCAAC
    CGGCCTGTTT TCTCTTGGTA CTCCCTAACC GGAAAGAGAT TTAAAGTCCG
    GTTGTCCCTC GTTT

AT2G01490.1

Model type
Protein coding
Short Description
phytanoyl-CoA dioxygenase (PhyH) family protein
Computational Description
phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2926 Blast hits to 2921 proteins in 334 species: Archae - 4; Bacteria - 485; Metazoa - 347; Fungi - 101; Plants - 64; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01500.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Computational Description
PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 564 Blast hits to 564 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR