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ET13235

CSHL Arabidopsis genetrap mutant lines

Original: ET13235

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13235

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3924278 [Map]; Strand: w
      • AT5G12140.1 - [+] show detail - cystatin-1
        Distance: -255; Region: promoter
      • AT5G12150.1 - [+] show detail - Rho GTPase activation protein (RhoGAP) with PH domain
        Distance: 0; Region: exon22 (3UTR)
      • AT5G12150.2 - [+] show detail - Rho GTPase activation protein (RhoGAP) with PH domain
        Distance: 0; Region: exon21 (3UTR)
    Flanking Genome Sequence: ET13235 - 5-prime edge 
    TTTTTACAAA CCTCACTCAC ATAAATCACA CTAACAACGA AGCAAGAGCA 
    AACAATTTCT CATCAATTGC GTGGTAAATA TATAGTTG

AT5G12140.1

Model type
Protein coding
Short Description
cystatin-1
Curator Summary
Encodes a cystatin.
Computational Description
cystatin-1 (CYS1); FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity; INVOLVED IN: cellular response to water deprivation, cellular response to cold, response to wounding, cellular response to heat; LOCATED IN: plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved site (InterPro:IPR018073), Proteinase inhibitor I25, cystatin (InterPro:IPR000010), Proteinase inhibitor I25, cystatin, conserved region (InterPro:IPR020381); BEST Arabidopsis thaliana protein match is: cystatin B (TAIR:AT3G12490.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G12150.1

Model type
Protein coding
Short Description
Rho GTPase activation protein (RhoGAP) with PH domain
Curator Summary
Encodes a protein with similarity to REN1, a Rho GTPase activating protein.
Computational Description
Rho GTPase activation protein (RhoGAP) with PH domain; FUNCTIONS IN: Rho GTPase activator activity, phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Rho GTPase activation protein (InterPro:IPR008936), Pleckstrin homology (InterPro:IPR001849), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: Rho GTPase activation protein (RhoGAP) with PH domain (TAIR:AT5G19390.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G12150.2

Model type
Protein coding
Short Description
Rho GTPase activation protein (RhoGAP) with PH domain
Curator Summary
Encodes a protein with similarity to REN1, a Rho GTPase activating protein.
Computational Description
Rho GTPase activation protein (RhoGAP) with PH domain; FUNCTIONS IN: Rho GTPase activator activity, phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Rho GTPase activation protein (InterPro:IPR008936), Pleckstrin homology (InterPro:IPR001849), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: Rho GTPase activation protein (RhoGAP) with PH domain (TAIR:AT5G19390.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR