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ET13236

CSHL Arabidopsis genetrap mutant lines

Original: ET13236

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET13236

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9933895 [Map]; Strand: w
      • AT1G28330.1 - [+] show detail - dormancy-associated protein-like 1
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: ET13236 - 3-prime edge 
    TCCTACTTTA TCCCTGCTTT TGCTAGGTAC CATTGCATCA GTTCACATTT 
    GCTAGTTTTC TTGTACAATA TCGTATGAAG AATTCTTGCG GAGCTTGAGT 
    GACGTGCGTT GTTGAGACTT GAGAGTTGAG ACAATTGTTT TGTTATAGCC 
    ATGTTAATTT TTTTCTTATT AAGCTAATGC TAATAATTTA ATCTCGAAGA 
    CTTAGAAAAA CAGATGGAGC TACATGTTGA GTTTGATCGA TAGAGGTCTT 
    TGGTTCTATA TATGGATCCT AGCTTAAAAA CTACGTAACT CAGAAAGAGT 
    AATCACGATG AACACGATCT AGTGTGTATT ACTACTAATC AAAGATTTTA 
    GCAGAAAAAG AATCTTAGAA AATAATTTCT TAAAATTAAA AAGCTCTTTA 
    AAAACTCTTA ATACTATTAT AGGAAAATTT GGAAAAACAG AAAAATGGAA 
    GTAGGTCTAT CCTAAAATGT AAAGCTTGCA TACTTGTTCA GTACTGATGC 
    GAAAAGTTTG TTAAATCCTT GAAAAACCTA AAGAACAAAC ACATTTGTCG 
    AAGAAATAGT CAAATAAAGA GAGAAATTTA AGTTCTACAA TGAAAAAATA 
    TGAAACAATC CAGTCTCGAT AAAATACCAA AGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16768628 [Map]; Strand: w
      • AT4G35240.2 - [+] show detail - Protein of unknown function (DUF630 and DUF632)
        Distance: -1541; Region: intergenic
      • AT4G35250.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 2543; Region: intergenic
    Flanking Genome Sequence: ET13236 - 5-prime edge 
    CTACTTTATC CCTGGACAGA AGAAAAGGTT GAAAGAAGGA GAAAATTCGG 
    CACAGAATAA TTGGGCGACG ACAGGCGACA CATTTCACTG GCGTAAAAAG 
    GTTCACTATA CACATGCTTT TTTTCACTTA GCTTCATATT TAATTATGTG 
    TGTATATAGT ATTAATTATG TGTGTATATA GTATTAATAC TTGTATTAAT 
    ACTATATAGT CTTAGGGAGG GTACAGCAAT TTTTTAGTCA TGTTATGCAT 
    GCAGTACATA CAAGTACTTA ATTAAGGAAA TTTTGGGTTT TTGATACACT 
    GTTCCTTTTT AATCGAAATA AGTTTTTTCT TCTTCATCTC ACTCGA

AT1G28330.1

Model type
Protein coding
Short Description
dormancy-associated protein-like 1
Curator Summary
dormancy-associated protein (DRM1)
Computational Description
dormancy-associated protein-like 1 (DYL1); CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: Dormancy/auxin associated family protein (TAIR:AT2G33830.2); Has 226 Blast hits to 226 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 225; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35240.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF630 and DUF632)
Computational Description
Protein of unknown function (DUF630 and DUF632); EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT2G17110.1).
Link
InterPro Scan - TAIR

AT4G35250.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G34460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR