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ET13244

CSHL Arabidopsis genetrap mutant lines

Original: ET13244

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13244

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22465403 [Map]; Strand: c
      • AT1G60990.2 - [+] show detail - Glycine cleavage T-protein family
        Distance: 0; Region: exon1 (CDS)
      • AT1G60990.3 - [+] show detail - Glycine cleavage T-protein family
        Distance: 0; Region: exon1 (CDS)
      • AT1G60990.1 - [+] show detail - Glycine cleavage T-protein family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13244 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTAAAATTG ATTTTGTTCA 
    GTTGGAGAAG GTTCATATAA AATTGACAAG TTTCTTTATC CTCCTCATAT 
    ATATAACTCG TATCTCTGAT TGGGTAATTA CTACTTACTC TACTGATCAC 
    ATTTGTTGTT CTTTTTTTTA TTAATATTTT AGGAACATAT AAAAACATAG 
    AAATGATAAA AAGTATTTTG CGAAATTTAT GACTTTACCA CATTTTCTCT 
    AAAGCTTTTC AGAATCATTT TTTTTCTCCC CTCTTTACCA ATTTTTGATC 
    ACCTTAAATT TTCAAAAAAC TATCCGTTTT TTGACCGTGA CTGTTCAAGC 
    AAACAAGGGA CCAAAACCGC GGGGCAAAAA TTCCAAATGT ACGGCCAACC 
    AAGAAAAAAA AAACTTTATT CAA

AT1G60990.1

Model type
Protein coding
Short Description
Glycine cleavage T-protein family
Computational Description
Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: glycine catabolic process, glycine decarboxylation via glycine cleavage system; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate-binding, YgfZ (InterPro:IPR017703), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G11860.3); Has 8503 Blast hits to 8501 proteins in 1606 species: Archae - 129; Bacteria - 4545; Metazoa - 161; Fungi - 80; Plants - 109; Viruses - 0; Other Eukaryotes - 3479 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G60990.2

Model type
Protein coding
Short Description
Glycine cleavage T-protein family
Computational Description
Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: glycine catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate-binding, YgfZ (InterPro:IPR017703), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G11860.3); Has 8503 Blast hits to 8501 proteins in 1606 species: Archae - 129; Bacteria - 4545; Metazoa - 161; Fungi - 80; Plants - 109; Viruses - 0; Other Eukaryotes - 3479 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G60990.3

Model type
Protein coding
Short Description
Glycine cleavage T-protein family
Computational Description
Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: glycine catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate-binding, YgfZ (InterPro:IPR017703), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G11860.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR