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ET13249

CSHL Arabidopsis genetrap mutant lines

Original: ET13249

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13249

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET13249 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGCCG TAGGTCAAAG 
    AAAAGAAAAA CTTACCTTCT TGCTTCTGTT CCAGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22896644 [Map]; Strand: c
      • AT3G61850.1 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G61850.4 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G61850.2 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G61850.3 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET13249 - 5-prime edge 
    CCTACTTTCT CCCTGATGAT GATGATCTTG CATGACCGGG AAAAAAGCAA 
    GTTGAGATCT TTATTTGACT TATTAGGGAT TTGGCTTGAG AAAAGAATCG 
    GTGGGTTTAG ATCTGGAAGT TTGGGATTAG AAGGTGAAGC TAAAGGTGTA 
    GAGGATCTCT TGTTCTTTCT TGAGCTACCT CCGACTGGGA CGTTACGAAG 
    AGAGCCACCT TCGGTCCAAT ACCTTCGACA ACCTTTGCAG AAGTATCTTG 
    GTTGCGTGAG ACTGTAGTTG TTGTAATAAC AGAACTTTGT GTTTGTTGAG 
    TTGCATCTTG GACAATTTAC TTTCTCTTGT GGCCTCGCCT TTCTAGTTTC 
    CATCGTAGCC GTGTTGTTGG TATTTCCTCC GGAGCCACCA TTGGATGCGG 
    TGGCGTTTGG CCTTGTGTTG GTGGCGATGA ATGTTGGTTG TTGTTGCGGT 
    GTGTTGTTG

AT3G61850.1

Model type
Protein coding
Short Description
Dof-type zinc finger DNA-binding family protein
Curator Summary
Zinc finger transcription factor of the Dof family involved in the control of seed germination.
Computational Description
dof affecting germination 1 (DAG1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G46590.2); Has 1148 Blast hits to 1141 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1095; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61850.2

Model type
Protein coding
Short Description
Dof-type zinc finger DNA-binding family protein
Curator Summary
Zinc finger transcription factor of the Dof family involved in the control of seed germination.
Computational Description
dof affecting germination 1 (DAG1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G46590.1); Has 1143 Blast hits to 1136 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1095; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61850.3

Model type
Protein coding
Short Description
Dof-type zinc finger DNA-binding family protein
Curator Summary
Zinc finger transcription factor of the Dof family involved in the control of seed germination.
Computational Description
dof affecting germination 1 (DAG1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G46590.1); Has 1143 Blast hits to 1136 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1095; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61850.4

Model type
Protein coding
Short Description
Dof-type zinc finger DNA-binding family protein
Curator Summary
Zinc finger transcription factor of the Dof family involved in the control of seed germination.
Computational Description
dof affecting germination 1 (DAG1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G46590.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR