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ET13255

CSHL Arabidopsis genetrap mutant lines

Original: ET13255

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13255

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 178052 [Map]; Strand: c
      • AT4G00413.1 - [+] show detail - pseudogene, similar to tomato ripening associated membrane protein, blastp ma...
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G00416.1 - [+] show detail - methyl-CPG-binding domain 3
        Distance: -970; Region: promoter
    Flanking Genome Sequence: ET13255 - 3-prime edge 
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCC TAGAGCTAAG 
    AACAGACCGA ATCTTACAGC AGGGTTGATG TGTCTACCTA AAAACACACA 
    TACACAAACA CAGGTTACAG AGAATTGTAG AATGTTACGA AGAATGGATT 
    ATATAATATA TGGTTTTGCC TTCTTATATA TGTCCACATC ATTTAAAATC 
    TTAAACCAAA ATTGAATAAT TTAAATAACT CATAAAACTT TTATATGTAT 
    GCTTGTCTTA CATTCAAAAT GCGCATTATC ACTAGTTTAA TATTTCTATA 
    ACTGATCAGT TTTTAATTGG TTGACACCAA ATGAAGTGGT CACTGACGTT 
    ATACGATTCT ATTGGGCTGC ATATTAAAGT TTTTTTAAGA ATTGGAACTT 
    TTAATATTAT CTAGGGTTGA AGGAACTAAA ACGCCTGTCC TAATGATGTA 
    AGGCTAGCCC TAACCTACAT GTATCTCAAG CGTCCAAATT TACGTTAATA 
    CAATTTTCAA AGCATTGTTT TTCCTCTCCT TGGAGAAAGT ACATGCAAAA 
    TCAAAATTAA TGGCTCCGAC TTTTCGAATC ACCGCAAGCT ACTATCTCTT 
    CGAGTTCTGG TTATAATAGT ACTTGATTAG ATACTTCTTA TAAGGCTTAA 
    AAGCCAACTT AAATGCTATT GCAGTAAAGA TTTCATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21918040 [Map]; Strand: c
      • AT5G53990.1 - [+] show detail - UDP-Glycosyltransferase superfamily protein
        Distance: -891; Region: promoter
      • AT5G54000.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: ET13255 - 5-prime edge 
    CCTACTTTCT CCCTGGTCAT GTTATCATGT ACTATATGTA CCTATGACAT 
    TTGAAATTGA TGGGTGAAGA TGTGATAGAA TCTCTCATGC ATGTTTAGAT 
    TATGAGCAAT GGAATATACA AGAGCCCAGT CCATAGAGCG GTGCTTAACG 
    GAGAAAAGGA AAGGATATCT GTGGCAACGT TTTGTAATGC TGATGAAGAC 
    AAAGAGATTC AACCTTTAAA TGGGCTTGTG TCTGAGGCTA GACCAAGGTT 
    GTACAAAGCA GTTAAGAAGT CTGAGAAAAA CTTCTTCGAT TACTATCAAC 
    AAGGTCGAAG ACCGATCGAA GATGCAATGA TCTGAAGTTA AAAAACATTG 
    ATCAGTCTGC TTTTAATATT CAAAATACAC ATGTCTCTTT AGTTACTTGA 
    TCCTTGAAAT AAGATCCCGT TTGCTTTCTT TGTTGGAACG TGATATTTCA 
    TTTGTCTTGT GTTGCCAATA ATATCAAACC CTCATTTGGG TATGTTTAAG 
    TGTTGTTAGA CGATCTATCT AAAAGATTTT GAACCAAATA GTGACTTTAG 
    AAGGTTAAAC GAACAACCTG CCTTGAGTGT TTGT

AT4G00413.1

Model type
Pseudogene
Computational Description
pseudogene, similar to tomato ripening associated membrane protein, blastp match of 91% identity and 4.3e-11 P-value to GP|395044|emb|CAA52067.1||X73847 tomato ripening associated membrane protein {Lycopersicon esculentum}
Link
InterPro Scan - TAIR

AT4G00416.1

Model type
Protein coding
Short Description
methyl-CPG-binding domain 3
Curator Summary
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational Description
methyl-CPG-binding domain 3 (MBD3); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 4 (TAIR:AT3G63030.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53990.1

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Computational Description
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G64910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G54000.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G20400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR